Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,581,016 – 12,581,111 |
Length | 95 |
Max. P | 0.610093 |
Location | 12,581,016 – 12,581,111 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -15.54 |
Energy contribution | -16.15 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.12 |
Mean z-score | -1.64 |
Structure conservation index | 0.59 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12581016 95 + 27905053 CUUGACAACGUGCUAAGGCCAGCA-------------------CUGGCAACGCGAUAAGCGCAUAAAU--AUAGCCCCCC-GUAAUAAAUUCAGCGUCACAUUUGACGCCACGCCAU .........(((((......))))-------------------)((((...(((.....)))......--..........-............((((((....))))))...)))). ( -24.20) >DroPse_CAF1 71414 115 + 1 CUUGACAACGUGCUAAGGCCGGCAACGGCAAUGGCAACGGCAACUGGCAGCGCGAUAAGCGCAUAAAUUCAAAGCCCCCCGGUAAUAAAUUCAGCGUCACAUUUGACGCC--GCCAU .(((....(((((((..((((....))))..)))).))).))).((((.((((.....))))...........(((....)))..........((((((....)))))).--)))). ( -42.20) >DroGri_CAF1 73803 91 + 1 CUUGACAACGUGCUAAGGCCAACA------------------ACUGGCAAC--GAUAAGCGCAUAAAU--AAAACC-UCG-GUAAUAAAUUCAGCGUCACUUCUGACACUAC--CAG .........(((((...((((...------------------..))))...--....)))))......--......-..(-((.........((.((((....)))).))))--).. ( -16.50) >DroMoj_CAF1 83695 93 + 1 CUUGACAACGUGCUAAGGCCAACA------------------ACUGGCAACGCGAUAAGCGCAUAAAU--AAAGCC-CCA-GUAAUAAAUUCAGCGUCAGUUCUGACACUAC--CAA .((((.....((((..(((.....------------------...(....)(((.....)))......--...)))-..)-)))......)))).((((....)))).....--... ( -17.40) >DroAna_CAF1 67896 90 + 1 CUUGACAACGUGCUAAGGCCGGCA-------------------CUGGCAACGCGAUAAGCGCAUAAAU--AAACCCCCCA-GUAAUAAAUUCAGCGUCGCAUUUGACGCCGC----- ..(((.....((((...((((...-------------------.))))...(((.....)))......--.........)-)))......)))((((((....))))))...----- ( -19.30) >DroPer_CAF1 76612 108 + 1 CUUGACAACGUGCUAAGGCCGGCAACGGC------AACGGCAACUGGCAGCGCGAUAAGCGCAUAAAUUCAAAGCCCCCC-GUAAUAAAUUCAGCGUCACAUUUGACGCC--GCCAU ..........((((...((((....))))------...))))..((((.((((.....))))..................-............((((((....)))))).--)))). ( -37.10) >consensus CUUGACAACGUGCUAAGGCCAGCA__________________ACUGGCAACGCGAUAAGCGCAUAAAU__AAAGCCCCCC_GUAAUAAAUUCAGCGUCACAUUUGACGCCAC__CAU .........((((....(((((.....................)))))...((.....)))))).............................((((((....))))))........ (-15.54 = -16.15 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:33 2006