Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,580,032 – 12,580,138 |
Length | 106 |
Max. P | 0.813168 |
Location | 12,580,032 – 12,580,138 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -20.58 |
Energy contribution | -20.17 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.29 |
Mean z-score | -1.97 |
Structure conservation index | 0.63 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12580032 106 - 27905053 AAUGGCUUUUAUGGCUGACUUCAUGGCUAAUAAAAAUUUGCAUUGUUCGGCCGGGUAGUAUAUUUUCGAUUCUGUUGGUCGAAACCAGAUCGGUUGUG------GCCAUGCC .((((((...(..(((((((...((((((((((.........))))).)))))...)))....((((((((.....))))))))......))))..))------)))))... ( -27.70) >DroPse_CAF1 70188 108 - 1 GAUGGCAUUUAUGGCCGACUUCAUGGCUAAUAAAAAUUAGCAUUGUCUGGCCACAA-AUAUUAUUUC---UCAGUUGGCCGAAAACAGAUCGGCUUUGAGCCGGGCCAGGUC ..((((((((.((((((((......((((((....))))))...))).))))).))-)).......(---((((..((((((.......)))))))))))....)))).... ( -37.00) >DroEre_CAF1 67541 106 - 1 AAUGGCUUUUAUGGCCGACUUCAUGGCUAAUAAAAAUUUGCAUUGUUCGGCCAGGGAGUAUUUUUUCGAUUCUGUUGGUCGAAACCAGAUCGGUUGUG------GCCAUGUC .((((((...(..(((((((((.((((((((((.........))))).))))).)))))....((((((((.....))))))))......))))..))------)))))... ( -33.90) >DroYak_CAF1 67928 106 - 1 AAUGGCUUUUAUGGCCGACUUCAUGGCUAAUAAAAAUUUGCAUUGUUCGGUCGGGGAGUAUUUUUUCGAUUCUGUUGCUCGAAACCAGAUCGGUUGUG------GCCACGUC ..(((((...(..(((((((((.((((((((((.........))))).))))).)))))....((((((.........))))))......))))..))------)))).... ( -26.80) >DroAna_CAF1 66766 104 - 1 AAUGGCUUUAACGGCCGACUUCAUGGCUAAUAAAAAUUUGCAUUGGUUGGCCGCAAAGUAGUUGU--AUUUCAGCUGGCCGAAACCAGAUCGACUUUG------GCCCAGAC ....(((((..(((((((((.....((.(((....))).))...))))))))).)))))(((((.--....)))))(((((((..(.....)..))))------)))..... ( -32.50) >DroPer_CAF1 75535 108 - 1 GAUGGCAUUUAUGGCCGACUUCAUGGCUAAUAAAAAUUAGCAUUGUCUGGCCACAA-AUAUUAUUUC---UCAACUGGCCGAAAACAGAUCGGCUUUGAGCCGGGCCAGGUC ..((((((((.((((((((......((((((....))))))...))).))))).))-)).......(---((((..((((((.......)))))))))))....)))).... ( -37.30) >consensus AAUGGCUUUUAUGGCCGACUUCAUGGCUAAUAAAAAUUUGCAUUGUUCGGCCACAAAGUAUUUUUUCGAUUCAGUUGGCCGAAACCAGAUCGGCUGUG______GCCAGGUC ..((((.....(((((((...((..((.(((....))).))..)).))))))).......................((((((.......)))))).........)))).... (-20.58 = -20.17 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:32 2006