Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,577,428 – 12,577,527 |
Length | 99 |
Max. P | 0.535480 |
Location | 12,577,428 – 12,577,527 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.31 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -18.30 |
Energy contribution | -18.63 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.20 |
Mean z-score | -1.88 |
Structure conservation index | 0.67 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12577428 99 + 27905053 AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGAAGUUCCCUUAUCUCG---------CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU ....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))......(((.....))).))))))) ( -29.50) >DroSec_CAF1 66098 99 + 1 AACAGAUGGCAGUGCGGUUGAAUAAAUUAAACUUAUCGGAGUUCCCUUAUCUCG---------CUGCGGCCCUCGAUCCCCAGUCCCCCUGGAAUCCCCAAUGCCAUU ....(((((((..(((((.((((((....(((((....)))))...)))).)))---------))))((.....(((..((((.....)))).))).))..))))))) ( -23.20) >DroSim_CAF1 66206 99 + 1 AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCCCUUAUCUCG---------CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU ....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))......(((.....))).))))))) ( -29.90) >DroEre_CAF1 64896 96 + 1 AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCUCUUAUCUCG---------CUGCCGCCCUCGAUCCCCACUC---CUGGAAUCCCCAAUGCCAUU ....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))..---.(((.....))).))))))) ( -29.50) >DroYak_CAF1 65209 99 + 1 AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCUCUUAUCUCG---------CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU ....(((((((((((((((((........(((((....)))))..........(---------(....))..)))).))))))......(((.....))).))))))) ( -29.90) >DroPer_CAF1 72626 92 + 1 AGCAGAUGGCGGAGGGAUCGUAUAAAUUUAGCUUAUCGGAGCGC-CAUAUCUCAUUAUUCACUCUGCUGCC--------CCG-----CUCGGAGUC--GGAUGCCAUU ....((((((...(((((..((......))((((....))))..-...)))))...((((((((((..((.--------..)-----).)))))).--)))))))))) ( -22.50) >consensus AACAGAUGGCAGUGGGGUCGAAUAAAUUAAACUUAUCGGAGUUCCCUUAUCUCG_________CUGCGGCCCUCGAUCCCCACUCCCCCUGGAAUCCCCAAUGCCAUU ....(((((((.(((((............(((((....)))))....................................(((.......)))...))))).))))))) (-18.30 = -18.63 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:31 2006