Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,574,388 – 12,574,518 |
Length | 130 |
Max. P | 0.863590 |
Location | 12,574,388 – 12,574,489 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -19.90 |
Energy contribution | -20.02 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.18 |
Mean z-score | -1.20 |
Structure conservation index | 0.74 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12574388 101 + 27905053 GAGUAACAGUGGCUCUAAAACUGGACCGACAAGAUGACUCUAAAACUA---------UGAAAACC---GAAUCCAUAGAUGGCGCAUGCAACUCAGUGCCGCCAUCUGACGUA ((((.....(((.((((....)))))))........))))........---------........---.......((((((((((((........))).)))))))))..... ( -24.62) >DroGri_CAF1 64996 111 + 1 GAGUAACAAUGACUGUCAAACUAGCCAUGCAG--UGACUCUCAGACCAACAUCGAUAUGGAUGCAUAACGACCAAUAGAUGGCGCAUGCAAUAUGCUGCUGCCAUCUAUUGCA ((((.((.(((.(((......))).)))...)--).))))...........(((.((((....)))).))).((((((((((((((.((.....))))).))))))))))).. ( -33.70) >DroSec_CAF1 63053 101 + 1 GAGUAACAGUGGCUCUAAAACUGGACGAACAAUAUGAUUCCAAAACUA---------UGAAAACC---GAAUCCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUA ......((((.........)))).(((........(((((........---------........---)))))..((((((((((((........))).))))))))).))). ( -23.59) >DroSim_CAF1 63140 101 + 1 GAGUAACAGUGGCUCUAAAACUGGACGGGCAAGAUGACUCCAAAACUA---------UGAAAACC---GAAUCCCUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUA ((((.......((((...........))))......))))........---------........---.......((((((((((((........))).)))))))))..... ( -24.02) >DroEre_CAF1 61782 101 + 1 GAGUAACAGUGGCUCUAAAACUGGACGGGUAAGCUGACUCUCAAACUA---------UGGAAACC---GAAUGCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUA (((...((((.((((...........))))..))))...)))......---------.(....).---.......((((((((((((........))).)))))))))..... ( -26.60) >DroYak_CAF1 61970 100 + 1 GAGUAACAGUGGCUCUAAAACUGGACGGGCAA-CUGACUCUCAAACUA---------UGGAAACC---GAAUUCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUA ......(((((((((((....))))..((((.-((((.((.....(((---------((((....---...)))))))...((....)))).)))))))))))).)))..... ( -29.50) >consensus GAGUAACAGUGGCUCUAAAACUGGACGGGCAAGAUGACUCUAAAACUA_________UGAAAACC___GAAUCCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUA ((((.....((..((((....))))....)).....))))...................................((((((((((((........)))).))))))))..... (-19.90 = -20.02 + 0.11)
Location | 12,574,428 – 12,574,518 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 76.75 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -16.29 |
Energy contribution | -16.32 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.40 |
Structure conservation index | 0.71 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12574428 90 + 27905053 U-AAAACUA---------UGAAAACC---GAAUCCAUAGAUGGCGCAUGCAACUCAGUGCCGCCAUCUGACGUAAGAAAUAUGCGUUUCCCACCUAUUUUCC-----G- .-.......---------.(((((..---.......((((((((((((........))).)))))))))((((((....).)))))..........))))).-----.- ( -21.00) >DroSec_CAF1 63093 90 + 1 C-AAAACUA---------UGAAAACC---GAAUCCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUAAGAAAUCUGCAGCUCCCACCUAUUUUCC-----G- .-.......---------.(((((..---.......((((((((((((........))).)))))))))..(((.(....))))............))))).-----.- ( -18.60) >DroSim_CAF1 63180 90 + 1 C-AAAACUA---------UGAAAACC---GAAUCCCUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUAAGAAAUCUGCAGCUCCCACCUAUUUUCC-----G- .-.......---------.(((((..---.......((((((((((((........))).)))))))))..(((.(....))))............))))).-----.- ( -18.40) >DroEre_CAF1 61822 90 + 1 U-CAAACUA---------UGGAAACC---GAAUGCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUAAGAAACCUGCAUCUCCGACCUAUUUUCC-----G- .-.......---------.((((((.---(((((((((((((((((((........))).))))))))).(....).....))))).)).)......)))))-----.- ( -24.60) >DroYak_CAF1 62009 90 + 1 U-CAAACUA---------UGGAAACC---GAAUUCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUAAGAAAUCUGUAGCUUCGACCUAUUUUCC-----G- .-....(((---------((((....---.......((((((((((((........))).))))))))).(....)...)))))))................-----.- ( -22.80) >DroMoj_CAF1 73805 109 + 1 UCAAAGUCAGCAUUGACGUCAGCGCAUAACGACCCAUAGAUGGCGCAUGCAAUACGCUGCGGCCAUCUAUUGCAUAACAGCUGCAACUGCUGCUUAUUGUCAACAUCGU ............((((((..((((((..........(((((((((((.((.....))))).))))))))(((((.......))))).))).)))...))))))...... ( -32.50) >consensus U_AAAACUA_________UGAAAACC___GAAUCCAUAGAUGGCGCAUGCGACUCAGUGCCGCCAUCUGACGUAAGAAAUCUGCAGCUCCCACCUAUUUUCC_____G_ ....................................((((((((((((........)))).))))))))........................................ (-16.29 = -16.32 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:26 2006