Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,568,421 – 12,568,513 |
Length | 92 |
Max. P | 0.935653 |
Location | 12,568,421 – 12,568,513 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.83 |
Mean single sequence MFE | -27.52 |
Consensus MFE | -23.98 |
Energy contribution | -23.46 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.13 |
Mean z-score | -1.59 |
Structure conservation index | 0.87 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12568421 92 + 27905053 UUGUUUUGGAGGUGGGAAUGCGGUCAUCAAACCAAAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCUCGGACAUCUUGCCUAAAAUAUAG .((((((..(((..(((.(.(((((((...............))))))).)...((.(((((.....))))))).)))..)))))))))... ( -25.26) >DroSec_CAF1 57288 92 + 1 UUGUUUUGGAGGUGGGAAUGCGGUCAUCAACCCAGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCACGGACAUCUUGCUUAAAAUAUAG .(((((((..((..(((.(.(((((((...............))))))).).(((((((......)))))))...)))..)))))))))... ( -26.86) >DroSim_CAF1 57259 92 + 1 UUGUUUUGGAGGUGGGAAUGCGGUCAUCAACCCGGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCACGGACAUCUUGCCUAAAAUAUAG .((((((..(((..(((.(.(((((((.((..(....)..))))))))).).(((((((......)))))))...)))..)))))))))... ( -32.50) >DroEre_CAF1 55668 92 + 1 UUGUUUUGGAGGUGGGAAUACGGUCAUCAACCCGGAAGAAUUAUGGCCGGAAUCGUGCUGGGGAUGGAUCGGACAUCGUGUCUAAAAUGUAU ..((((((((((((.((...(((((((.((..(....)..)))))))))...)).))))...((((.......))))...)))))))).... ( -25.60) >DroYak_CAF1 55622 92 + 1 UUGUUUUGGAGGUGGGAAUACGGUCAUCAACCCGGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCUCGGACAUCUUGCUUGAAAUACAU .(((.((..(((..(((...(((((((.((..(....)..))))))))).....((.(((((.....))))))).)))..)))..)).))). ( -27.40) >consensus UUGUUUUGGAGGUGGGAAUGCGGUCAUCAACCCGGAAGAAUUAUGACCGGAAUCGUGCUGGGGAUGGCUCGGACAUCUUGCCUAAAAUAUAG .((((((((.((((.((.(.(((((((.((..(....)..))))))))).).)).)))).((((((.......))))))..))))))))... (-23.98 = -23.46 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:23 2006