Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,566,557 – 12,566,674 |
Length | 117 |
Max. P | 0.549651 |
Location | 12,566,557 – 12,566,674 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.51 |
Mean single sequence MFE | -30.11 |
Consensus MFE | -18.75 |
Energy contribution | -18.47 |
Covariance contribution | -0.29 |
Combinations/Pair | 1.30 |
Mean z-score | -1.93 |
Structure conservation index | 0.62 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12566557 117 + 27905053 --AGCGGCGAGGCAGCAGCGCAUAAUUGAAUCGAAGCGCUCU-UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAACCGCCCCCAGCGCCAUUCCAUAAACGCUGGCUUAA --...((((..((....))((((((((((...(((((((...-..)))))))(((....)))..)))))))....)))........)))).((((((............))))))..... ( -33.00) >DroVir_CAF1 57933 116 + 1 --GGUUGCAG-CUGGCAGCGCGUAAUUGAAUUGAAGCGUUCU-UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAAACGCCCCCAGCGCCAUUUCAUAAACGCUGCCUUAA --........-..((((((((((((((((...(((((((...-..)))))))(((....)))..))))))....))))........(((.....))).............)))))).... ( -28.50) >DroGri_CAF1 56561 118 + 1 --GGCUGGGGGUCAGCAGCGUAUAAUUGAAUUGAAGCGUUCUUUUGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUAAUAAACGCCCCCAGCGCCAUUUCAUAAACGUUGCCAUAA --.(((((((((.....((((.(((((((...(((((((......)))))))(((....)))..)))))))...)))).........)))))))))........................ ( -33.64) >DroWil_CAF1 21171 110 + 1 UCGACAGCCGGCAACGGGCGCAUAAUUGAAUUGGAG----------CGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAACCGCCCCCAGCGCCAUUUCAUAAAUGUCGGCUUAA .....((((((((...(((((((.....(((((..(----------(((((........)))))))))))....)))).........((.....)))))..........))))))))... ( -27.52) >DroMoj_CAF1 63351 110 + 1 --------AG-GGGCCAAUGCAUAAUUGAAUUGAAGCGCUCU-UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAAACGCCCCCAGCGCCAUUUCAUAAACGCAGCCUUAA --------.(-((((..((((((((((((...(((((((...-..)))))))(((....)))..)))))))....))))).......)))))..(((............)))........ ( -28.30) >DroAna_CAF1 54115 116 + 1 --UUGGGUGA-ACAGCGGCGCAUAAUUGAAUUGAAGCGCUCU-UUGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAACCGCCCCCAGCGCCAUUCCAUAAACGUUGGCUUAA --..(((((.-.....(..((((((((((...(((((((...-..)))))))(((....)))..)))))))....)))..).....)))))((((((............))))))..... ( -29.70) >consensus __GGCGGCGG_CCAGCAGCGCAUAAUUGAAUUGAAGCGCUCU_UCGCGUUUCUUCAAAUGAACGUCAAUUAAAAAUGCAUCAUAAACGCCCCCAGCGCCAUUUCAUAAACGCUGCCUUAA ...............((((((((((((((...(((((((......)))))))(((....)))..)))))))....)))........(((.....))).............))))...... (-18.75 = -18.47 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:22 2006