Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,563,299 – 12,563,406 |
Length | 107 |
Max. P | 0.990900 |
Location | 12,563,299 – 12,563,406 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.37 |
Mean single sequence MFE | -22.07 |
Consensus MFE | -13.60 |
Energy contribution | -14.02 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.18 |
Mean z-score | -1.90 |
Structure conservation index | 0.62 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12563299 107 + 27905053 CGUUUUAAUUGAAUAA----CUUAA--------CUGUUUCUUACUUUUUUCUGUGUGAAUUUGGGUGGUAAUUUGAAGGG-GCCUAUCUCAACGCCCUCCAAAUUUAUCACCCCAAUCGU .......((((.....----.....--------....(((.(((........))).)))...(((((((((((((..(((-((..........))))).)))).)))))))))))))... ( -24.30) >DroSec_CAF1 52172 107 + 1 CAUUUUAGUUGAAUAA----CUUUA--------CUGUUUCUUACUUUUUUCUGUGUAAAUUUGGGUGGUACUUUGAAGGG-GCCUAUCUCAACGCCCUCCAAAUUUAUCACCCCAAUCGU .......((((.....----.....--------.......((((..........))))....((((((((..((...(((-((..........)))))...))..))))))))))))... ( -21.00) >DroSim_CAF1 52136 102 + 1 CACUUUACUAGAAUAA----C-------------UGUUUCUUACUUUUUUCUGUGUGAAUUUGGGUGGUACUUUGAAGGG-GCCUAUCUCAACGCCCUCCAAAUUUAUCACCCCAAUCGU ...((((((((((...----.-------------.((.....))....))))).)))))...((((((((..((...(((-((..........)))))...))..))))))))....... ( -25.10) >DroEre_CAF1 50105 106 + 1 UAUAUUGUUUUAAUAA----CCUAA--------UUGUUUC-UACUUUUCUCUGUGUGAAUUUGGGUGGUACUUUGAAGGG-GCCUAUCUCAACGCCCUCCAAAUUUAUCACCCCAAUCGU ................----....(--------(((.(((-(((........))).)))...((((((((..((...(((-((..........)))))...))..))))))))))))... ( -21.40) >DroYak_CAF1 49961 103 + 1 CAUAUUUAUUUUAUAA----CUUAC--------UU---AC-UACUUCUUUCUGUGUGAAUUUGGGUGGUACUUUGAAGGG-GCCUAUCUCAACGCCCUCCAAAUUUAUCACCCCAAUCGU ................----.....--------((---((-.((........))))))....((((((((..((...(((-((..........)))))...))..))))))))....... ( -21.40) >DroAna_CAF1 51359 103 + 1 UAUAUUGAUAUAGUAAGUCCCAUAUUUGUUGCUCUGUUUCUAAUGUU-----------------UUGUUUUUUUGAAGGGCGCUUUUAUCGGCCUCCUUCGGAUUUAUCACACCAAUCGU ...((((.....((((((((.(((((.(..((...))..).))))).-----------------..........((((((.(((......))).)))))))))))))).....))))... ( -19.20) >consensus CAUAUUAAUUGAAUAA____CUUAA________CUGUUUCUUACUUUUUUCUGUGUGAAUUUGGGUGGUACUUUGAAGGG_GCCUAUCUCAACGCCCUCCAAAUUUAUCACCCCAAUCGU ..............................................................((((((((.((((.((((.(..........).)))).))))..))))))))....... (-13.60 = -14.02 + 0.42)
Location | 12,563,299 – 12,563,406 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.37 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -18.53 |
Energy contribution | -19.42 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.12 |
Mean z-score | -2.61 |
Structure conservation index | 0.74 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12563299 107 - 27905053 ACGAUUGGGGUGAUAAAUUUGGAGGGCGUUGAGAUAGGC-CCCUUCAAAUUACCACCCAAAUUCACACAGAAAAAAGUAAGAAACAG--------UUAAG----UUAUUCAAUUAAAACG ..((((((((((...(((((((((((.(((......)))-)))))))))))..)))))...(((..((........))..))).)))--------))...----................ ( -28.00) >DroSec_CAF1 52172 107 - 1 ACGAUUGGGGUGAUAAAUUUGGAGGGCGUUGAGAUAGGC-CCCUUCAAAGUACCACCCAAAUUUACACAGAAAAAAGUAAGAAACAG--------UAAAG----UUAUUCAACUAAAAUG ...(((((((((.....(((((((((.(((......)))-)))))))))....)))))...(((((..........)))))...)))--------)..((----((....))))...... ( -26.30) >DroSim_CAF1 52136 102 - 1 ACGAUUGGGGUGAUAAAUUUGGAGGGCGUUGAGAUAGGC-CCCUUCAAAGUACCACCCAAAUUCACACAGAAAAAAGUAAGAAACA-------------G----UUAUUCUAGUAAAGUG ..((((((((((.....(((((((((.(((......)))-)))))))))....)))))...(((..((........))..))).))-------------)----)).............. ( -26.50) >DroEre_CAF1 50105 106 - 1 ACGAUUGGGGUGAUAAAUUUGGAGGGCGUUGAGAUAGGC-CCCUUCAAAGUACCACCCAAAUUCACACAGAGAAAAGUA-GAAACAA--------UUAGG----UUAUUAAAACAAUAUA ..((((((((((.....(((((((((.(((......)))-)))))))))....)))))...(((.....))).......-....)))--------))...----................ ( -26.00) >DroYak_CAF1 49961 103 - 1 ACGAUUGGGGUGAUAAAUUUGGAGGGCGUUGAGAUAGGC-CCCUUCAAAGUACCACCCAAAUUCACACAGAAAGAAGUA-GU---AA--------GUAAG----UUAUAAAAUAAAUAUG ..((...(((((.....(((((((((.(((......)))-)))))))))....)))))....))...............-..---..--------.....----................ ( -24.50) >DroAna_CAF1 51359 103 - 1 ACGAUUGGUGUGAUAAAUCCGAAGGAGGCCGAUAAAAGCGCCCUUCAAAAAAACAA-----------------AACAUUAGAAACAGAGCAACAAAUAUGGGACUUACUAUAUCAAUAUA ...(((((((((.(((.((((((((..((........))..)))))..........-----------------..(((...................)))))).))).)))))))))... ( -19.91) >consensus ACGAUUGGGGUGAUAAAUUUGGAGGGCGUUGAGAUAGGC_CCCUUCAAAGUACCACCCAAAUUCACACAGAAAAAAGUAAGAAACAG________UUAAG____UUAUUAAAUUAAAAUG .......(((((.....(((((((((.(((......))).)))))))))....))))).............................................................. (-18.53 = -19.42 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:21 2006