Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,562,645 – 12,562,748 |
Length | 103 |
Max. P | 0.586718 |
Location | 12,562,645 – 12,562,748 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 83.46 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -22.10 |
Energy contribution | -22.02 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.23 |
Mean z-score | -1.92 |
Structure conservation index | 0.70 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12562645 103 + 27905053 CCUUGAUUGAUGGCCUCCAUCUCCGUUCACCAUUCGCUGUUGAGAACUGGUGCAGGGCAAUUAGACAAGCCGUUUAAUUGCCACCUUGGCAGCUCGUUUGCCU ...(((..(((((...))))).....)))......(((((..((..(((...)))(((((((((((.....)))))))))))..))..))))).......... ( -33.30) >DroSec_CAF1 51526 103 + 1 CCUUGAUUGAUGGCCUCCAUCUCCGUUCACCGUUCGCUGUUGAGAACUGGUGCGGGGCAAUUAGACAAGCCGUUUAAUUGCCACCUUGGCAGCUCGUUUGCCU ........(((((...))))).(((..((((((((........)))).)))))))(((((((((((.....))))))))))).....(((((.....))))). ( -36.90) >DroSim_CAF1 51498 103 + 1 CCUUGAUUGAUGGCCCCCAUCUCCGUUCACCAUUCGCUGUUGAGAACUGGUGCUGGGCAAUUAGACAAGCCGUUUAAUUGCCACCUUGGCAGCUCGUUUGCCU ........(((((...)))))......((((((((........))).)))))...(((((((((((.....))))))))))).....(((((.....))))). ( -31.70) >DroEre_CAF1 49438 102 + 1 CCUUGAUUGAUGGCCUCCAUCUCC-UUCGCCAUUCGCUGUUGAGAACUGGUGCAGGGCAAUUAGACAAGCAGUUUAAUUGCCACCUUGGCACCUCGUUUGCCU ........(((((...)))))..(-(.((((((((........))).))))).))(((((((((((.....))))))))))).....((((.......)))). ( -32.50) >DroYak_CAF1 49294 102 + 1 CCUUGAUUGAUGGCCUCCAUCUCC-UUCGCCAUUCGCCGUUGAGAACUGGUGCAGGGCAAUUAGACAAGCUGUUUAAUUGCCACCUUGGCAGCUCGUUUGCCU ........(((((...)))))..(-(.((((((((........))).))))).))(((((((((((.....))))))))))).....(((((.....))))). ( -33.70) >DroAna_CAF1 50696 87 + 1 ---UGAUGGAUGGGUCG-------------UGUUUGCUUUCCAAAACUGGUUCAGAGCAAUUAGACAAGCGAUUAAAUUGCCACCUCAGCACUUACCCGCCCU ---....((.(((((.(-------------(((((((((((((....)))...)))))))........(((((...))))).......))))..))))).)). ( -22.00) >consensus CCUUGAUUGAUGGCCUCCAUCUCC_UUCACCAUUCGCUGUUGAGAACUGGUGCAGGGCAAUUAGACAAGCCGUUUAAUUGCCACCUUGGCAGCUCGUUUGCCU ...........(((.............((((((((........))).)))))...(((((((((((.....))))))))))).................))). (-22.10 = -22.02 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:19 2006