| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,561,790 – 12,561,907 |
| Length | 117 |
| Max. P | 0.719207 |
| Location | 12,561,790 – 12,561,907 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.43 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.45 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12561790 117 - 27905053 U-G-GCGCUGCCCCAUUGCAU-ACCCCACCAUAACGUAGCAAGUUUGAAUAUACUCGUACCCGUAAGAUUCCCGAGUAUAUUAGGUAGCAAAAUUUUUACGAGCUCAUUAUGGCUCAUUU .-.-..((((((...((((.(-((...........))))))).....((((((((((....(....).....)))))))))).))))))...........(((((......))))).... ( -31.50) >DroVir_CAF1 52692 102 - 1 U-A-----AG-CCAGCAGCA--GCCA---CAUAACGUACCAAGUUUGAAUAUACUC------GUAAGAUUCCUGAGUAUAUUAGGUAGCAAAAUUUUUACGAGCUCAUUAUGGCUCAUUU .-.-----..-......((.--(((.---((.(((.......)))))(((((((((------(.........)))))))))).))).))...........(((((......))))).... ( -22.40) >DroGri_CAF1 51223 107 - 1 U-AAGCGAAG-CAAACAGCA--GCCA---CAUAACGAACCAAGUUUGAAUAUACUC------GUAAGAUUCCUGAGUAUAUUAGGUAGCAAAAUUUUUACGAGCUCAUUAUGGCUCAUUU .-..((...(-(.....)).--(((.---.....(((((...)))))(((((((((------(.........)))))))))).))).))...........(((((......))))).... ( -24.00) >DroWil_CAF1 14519 109 - 1 ACG-UCUACG-UCCACGGCAUCAACU---CGUAACGUACCAAGUUUGAAUAUACUC------GUAAGAUUCCCGAGUAUAUUAGGUAGCAAAAUUUUUACGAGCUCAUUAUGGCUCAUUU ...-..((((-(..((((.......)---))).)))))....(((..(((((((((------(.........))))))))))....)))...........(((((......))))).... ( -23.80) >DroMoj_CAF1 57409 92 - 1 U-G----------------A--GCCA---CAUAACGAACCAAGUUUGAAUAUACUC------GUAAGAUUCCUGAGUAUAUUAGGUAGCAAAAUUUUUACGAGCUCAUUAUGGCUCAUUU (-(----------------(--((((---.....(((((...)))))......(((------((((((..(((((.....))))).........))))))))).......)))))))... ( -25.30) >DroAna_CAF1 49376 114 - 1 C-A-GGACUGGCACAUUGCAU-ACCC---CAUAAUGUAGCAAGUUUGAAUAUACUCGUACUCGUAAGAUUCCCGAGUAUAUUAGGUAGCAAAAUUUUUACGAGCUCAUUAUGGCUCAUUU .-.-((....((.....))..-.))(---(((((((.(((.......((((((((((...((....))....))))))))))..((((........))))..)))))))))))....... ( -29.70) >consensus U_A_GC__AG_CCCACAGCA__ACCA___CAUAACGUACCAAGUUUGAAUAUACUC______GUAAGAUUCCCGAGUAUAUUAGGUAGCAAAAUUUUUACGAGCUCAUUAUGGCUCAUUU .................((...(((....((.(((.......)))))(((((((((.................))))))))).))).))...........(((((......))))).... (-15.47 = -15.45 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:18 2006