Locus 4802

Sequence ID 3R_DroMel_CAF1
Location 12,548,886 – 12,548,983
Length 97
Max. P 0.593693
window7877

overview

Window 7

Location 12,548,886 – 12,548,983
Length 97
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.52
Mean single sequence MFE -34.48
Consensus MFE -20.17
Energy contribution -19.87
Covariance contribution -0.30
Combinations/Pair 1.19
Mean z-score -1.69
Structure conservation index 0.58
SVM decision value 0.12
SVM RNA-class probability 0.593693
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12548886 97 - 27905053
--------UGG------CCAUGUUGCAUGUAGCAUGUUGCAGUUAAUAAUUAUUGAAAUGUGCGGCCUGCCAGGAGUCGUGG-CAUGCUCCUUGUGCUUCCUGCGCGGCUUC
--------.((------(((((...)))...(((((((.((((........)))).))))))))))).(((((((((.....-...)))))).((((.....)))))))... ( -33.00)
>DroPse_CAF1 38519 90 - 1
--------GGG------CCAUGUUGCA-------UGUUGCAGUUAAUAAUUAUUGAAAUGUGCGGCCUGCGAGGAAUUGUGC-UGUGCUCCUUGCGCUUCCUGCGCGGCUUC
--------(((------((..((((((-------((((.((((........)))).))))))))))..((((((((..((((-..........))))))))).)))))))). ( -32.90)
>DroGri_CAF1 34394 111 - 1
UGUGCGUGUGCUGCUGCUGCUGCUCCAUGUUGCAUGUUGCAGUUAAUAAUUAUUGAAAUGUGUGGCC-GCCAGGAAUUGUGCUCGUGCUCCUUGUGCUUCCUGCGCGGCUUC
...(((((.((.((....)).))..))))).(((((((.((((........)))).)))))))((((-((((((((..(..(...........)..))))))).)))))).. ( -36.60)
>DroMoj_CAF1 40223 110 - 1
UGUGCGUGUG-UGUUGCGGCUGCUCCAUGUUGCAUGUUGCAGUUAAUAAUUAUUGAAAUGUGCGGCC-GCCAGGAAUUGUGCUCGUGCUCCUUGUGCUUCCUGCGCGGCUUC
.(..(((...-..((((((((((........))).)))))))(((((....))))).)))..)((((-((((((((..(..(...........)..))))))).)))))).. ( -37.80)
>DroAna_CAF1 37430 97 - 1
--------UGG------CCAUGUUGCAUGUAGCAUGUUGCAGUUAAUAAUUAUUGAAAUGUGCGGCCUGCCAGGAGCUGGGC-UAUGCUCCUUGCGCUUCCUGCGCGACGUC
--------(((------(...(((((((((.((.....))..(((((....))))).)))))))))..))))(((((.....-...)))))((((((.....)))))).... ( -33.70)
>DroPer_CAF1 42788 90 - 1
--------GGG------CCAUGUUGCA-------UGUUGCAGUUAAUAAUUAUUGAAAUGUGCGGCCUGCGAGGAAUUGUGC-UGUGCUCCUUGCGCUUCCUGCGCGGCUUC
--------(((------((..((((((-------((((.((((........)))).))))))))))..((((((((..((((-..........))))))))).)))))))). ( -32.90)
>consensus
________UGG______CCAUGUUGCAUGU_GCAUGUUGCAGUUAAUAAUUAUUGAAAUGUGCGGCCUGCCAGGAAUUGUGC_CGUGCUCCUUGCGCUUCCUGCGCGGCUUC
.....................(((((.........((((((.(((((....)))))....))))))..((.(((((........((((.....))))))))))))))))... (-20.17 = -19.87 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:16 2006