Locus 480

Sequence ID 3R_DroMel_CAF1
Location 1,797,621 – 1,797,721
Length 100
Max. P 0.988780
window777

overview

Window 7

Location 1,797,621 – 1,797,721
Length 100
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 76.81
Mean single sequence MFE -34.04
Consensus MFE -19.54
Energy contribution -18.57
Covariance contribution -0.97
Combinations/Pair 1.33
Mean z-score -2.72
Structure conservation index 0.57
SVM decision value 2.13
SVM RNA-class probability 0.988780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1797621 100 - 27905053
GCU---UGUGUGCCUGCGACCGUGUGUAAAUAA-AAUUAUGCGUAAACUUCGUC-GGCUUGUUGACG---CCGACAAGCGUGUUACAUUGCAGCAUUUACAUGC----GAGC-------
(((---((((((.((((((....((((((....-..))))))((((.(((.(((-(((........)---))))))))....)))).))))))......)))))----))))------- ( -31.90)
>DroPse_CAF1 97164 109 - 1
GCUCUGUGUGUGUAUGCCACAGCAUAUAAAUAA-AAUUAUGCGUAAAGUUUCCCAGGCUUGUUGACG---CCGACAAGCGUUUUACGUGGCAACAUUCACAUAC----GAGUACGAG--
((((.(((((((..((((((.(((((.......-...)))))(((((.......(.((((((((...---.)))))))).)))))))))))).....)))))))----)))).....-- ( -40.01)
>DroWil_CAF1 108065 104 - 1
GUU---UGUGUGUGUAUGU-AGGUUAUAAAUAACAAUUAUGCGUAAACUUUUCA-GGCUUGUUGAUU---UCGACAAGCGUAUUACAUUGCAACAUUUUCAUACAUAUAAGC-------
(((---((((((((((((.-..((((....))))...)))))((..........-.((((((((...---.))))))))(((......))).))........))))))))))------- ( -27.30)
>DroYak_CAF1 107436 100 - 1
GCU---UGUGUGCAUGCGACCGUGUGUAAAUAA-AAUUAUGCGUAAACUUCGUC-UGCUUGUUGACG---CCGACAAGCGUGUUACAUUGCGGCAUUUACAUGC----GAGC-------
(((---((((((.....(.((((((((((....-......(((.......))).-.((((((((...---.))))))))...))))).)))))).....)))))----))))------- ( -30.20)
>DroAna_CAF1 98412 104 - 1
GCC---UGUGUGGCUGUGUGUGCGUGUAAAUAA-AAUUAUGCGUAAACUUCGCCAAGCUUGUUGACGCCGCCGACAAGCGUGUUACAUCGCAACAUUAACAUGC----GAGC-------
((.---((((((...((((.(((((((((....-......(((.......)))...((((((((.......))))))))...))))).))))))))...)))))----).))------- ( -33.10)
>DroPer_CAF1 99774 111 - 1
GCUCUGUGUGUGUAUGCCACAGCAUAUAAAUAA-AAUUAUGCGUAAAGUUUCCCAGGCUUGUUGACG---CCGACAAGCGUGUUACGUGGCAACAUUCACAUAC----GAGUACGAGUU
((((.(((((((..((((((.(((((.......-...)))))((((.......((.((((((((...---.)))))))).)))))))))))).....)))))))----))))....... ( -41.71)
>consensus
GCU___UGUGUGUAUGCGACAGCGUAUAAAUAA_AAUUAUGCGUAAACUUCGCC_GGCUUGUUGACG___CCGACAAGCGUGUUACAUUGCAACAUUUACAUAC____GAGC_______
......(((((((.((((...(((((...........)))))..............((((((((.......)))))))).........))))))))..))).................. (-19.54 = -18.57 +  -0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:14 2006