Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 307,310 – 307,430 |
Length | 120 |
Max. P | 0.842139 |
Location | 307,310 – 307,430 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -43.62 |
Consensus MFE | -41.06 |
Energy contribution | -40.42 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.14 |
Mean z-score | -1.25 |
Structure conservation index | 0.94 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 307310 120 + 27905053 CAAGCGGCUGCAGGCCGCUGUUCACGAGCGGCACAAGGGGGAGCAGCUUAUGUUGAUGGAGCUGAUCGUGGAUUGUGUCCUGCACGAGGACAUUGAGUCCACCGUGUUUUAUAGCUUUAA .((((((((((..((((((.......)))))).(....)...)))))).......(((((((.....((((((((((((((.....)))))))..)))))))...))))))).))))... ( -44.40) >DroSec_CAF1 43712 120 + 1 CAAGCGGCUGCAGGCUGCUGUUCACGAGCGGCACAAGGGGGAGCAGCUUAUGUUGAUGGAGCUGAUCGUGGAUUGCGUCCUGCACGAGGACAUUGAGUCCACCGUGUUUUAUAGCUUUAA ...((((.((((((.(((.((((((((.((((.((........((((....)))).))..)))).)))))))).))).))))))...((((.....)))).))))............... ( -43.40) >DroSim_CAF1 44559 120 + 1 CAAGCGACUGCAGGCUGCUGUUCACGAGCGGCACAAGGGGGAGCAGCUUAUGUUGAUGGAGCUGAUCGUGGAUUGCGUCCUGCACGAGGACAUUGAGUCCACCGUGUUUUAUAGCUUUAA .((((....(((((.(((.((((((((.((((.((........((((....)))).))..)))).)))))))).))).)))))(((.((((.....))))..)))........))))... ( -42.50) >DroEre_CAF1 46632 120 + 1 CAGGCGGCUGCAGGCCGCUGUGCACGAGCGGCACAAGGGGGAGCAGCUUAUGCUAAUGGAGCUGAUCGUGGAUUGCGUCCUGCACGAGGAUAUUGAGUCGACCGUGUUCUACAGCUUUAA ..((((((((((((.(((.((.(((((.((((.(.......((((.....))))....).)))).))))).)).))).))))).(((.....)))))))).))................. ( -43.40) >DroYak_CAF1 46448 120 + 1 CAAGCGUCUGCAGGCCGCUGUUCACGAGCGGCACAAGGGAGAGCAACUUAUGCUAAUGGAGCUGAUCGUGGAUUGCGUCCUGCACGAGGAUAUUGAGUCCACCGUGUUCUAUAGCUUUAA .((((.((((((((.(((.((((((((.((((.(.......((((.....))))....).)))).)))))))).))).)))))).))((((.....)))).............))))... ( -44.40) >consensus CAAGCGGCUGCAGGCCGCUGUUCACGAGCGGCACAAGGGGGAGCAGCUUAUGUUGAUGGAGCUGAUCGUGGAUUGCGUCCUGCACGAGGACAUUGAGUCCACCGUGUUUUAUAGCUUUAA .((((....(((((.(((.((((((((.((((.(.......((((.....))))....).)))).)))))))).))).)))))(((.((((.....))))..)))........))))... (-41.06 = -40.42 + -0.64)
Location | 307,310 – 307,430 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -31.78 |
Energy contribution | -32.66 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.22 |
Structure conservation index | 0.90 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 307310 120 - 27905053 UUAAAGCUAUAAAACACGGUGGACUCAAUGUCCUCGUGCAGGACACAAUCCACGAUCAGCUCCAUCAACAUAAGCUGCUCCCCCUUGUGCCGCUCGUGAACAGCGGCCUGCAGCCGCUUG ...((((........((((.((((.....))))))))(((((.(((((.....((.(((((...........))))).))....)))))(((((.(....)))))))))))....)))). ( -39.40) >DroSec_CAF1 43712 120 - 1 UUAAAGCUAUAAAACACGGUGGACUCAAUGUCCUCGUGCAGGACGCAAUCCACGAUCAGCUCCAUCAACAUAAGCUGCUCCCCCUUGUGCCGCUCGUGAACAGCAGCCUGCAGCCGCUUG ...((((........((((.((((.....))))))))(((((.(((((.....((.(((((...........))))).))....)))))..(((.(....))))..)))))....)))). ( -34.70) >DroSim_CAF1 44559 120 - 1 UUAAAGCUAUAAAACACGGUGGACUCAAUGUCCUCGUGCAGGACGCAAUCCACGAUCAGCUCCAUCAACAUAAGCUGCUCCCCCUUGUGCCGCUCGUGAACAGCAGCCUGCAGUCGCUUG ...((((........((((.((((.....))))))))(((((.(((((.....((.(((((...........))))).))....)))))..(((.(....))))..)))))....)))). ( -34.70) >DroEre_CAF1 46632 120 - 1 UUAAAGCUGUAGAACACGGUCGACUCAAUAUCCUCGUGCAGGACGCAAUCCACGAUCAGCUCCAUUAGCAUAAGCUGCUCCCCCUUGUGCCGCUCGUGCACAGCGGCCUGCAGCCGCCUG .....(((((((.(((.((..((..........(((((.(........).))))).(((((...........))))).))..)).)))((((((.(....))))))))))))))...... ( -33.10) >DroYak_CAF1 46448 120 - 1 UUAAAGCUAUAGAACACGGUGGACUCAAUAUCCUCGUGCAGGACGCAAUCCACGAUCAGCUCCAUUAGCAUAAGUUGCUCUCCCUUGUGCCGCUCGUGAACAGCGGCCUGCAGACGCUUG ...((((........((((.(((.......)))))))(((((.(((....(((((.(.((......((((.....)))).........)).).)))))....))).)))))....)))). ( -33.96) >consensus UUAAAGCUAUAAAACACGGUGGACUCAAUGUCCUCGUGCAGGACGCAAUCCACGAUCAGCUCCAUCAACAUAAGCUGCUCCCCCUUGUGCCGCUCGUGAACAGCGGCCUGCAGCCGCUUG ...((((........((((.((((.....))))))))(((((.(((((.....((.(((((...........))))).))....)))))(((((.(....)))))))))))....)))). (-31.78 = -32.66 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:19 2006