Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,541,038 – 12,541,148 |
Length | 110 |
Max. P | 0.746789 |
Location | 12,541,038 – 12,541,148 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.58 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -18.88 |
Energy contribution | -17.80 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.32 |
Mean z-score | -1.44 |
Structure conservation index | 0.70 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12541038 110 + 27905053 CCAUUUCACCAGUUUUCCAAAGGGCUGGCUGAGGUGCGAAGCUGGUGAUUUUCUAGCUAGAUAGAUUAUCUAUAAGUUCAAAAAA---UGCAAAAAAUU----GGUCACUUGUAAUA .((((((((((((((......))))))).)))))))...((((((.......))))))............(((((((((((....---.........))----))..)))))))... ( -24.72) >DroSec_CAF1 29976 105 + 1 CCAUUUCACCAGUUUUCCAAGGGACUGGCUGAGGUGCGAAGCUGGUGGUUUUGUAACUAGAUAGAUUAUCUAUAAGUG-----AG---UACCAAAACUU----UAUCACUUGUAAUA .((((((((((((((......))))))).)))))))..(((.(((((((((((..(((..((((.....)))).....-----))---)..))))))).----.)))))))...... ( -28.10) >DroSim_CAF1 29952 89 + 1 CCAUUUCACCAGUUUUCCAAGGGACUGGCUGAGGUGCGAAACUGGUGGUUUUCUAGCUAGAUAGAUUAUCUAUAAGUU-----AG---UGCCAAAUG-------------------- .((((((((((((((......))))))).))))))).........((((...((((((..((((.....)))).))))-----))---.))))....-------------------- ( -27.80) >DroEre_CAF1 27630 105 + 1 CUAUUUUACCAGUUUUCCGAGGGGCUGGCUGAGGUGCGCAGCUGGUGGUUUUCUAGCUAGAUAGAUAAUCUAUAAGUU-----AAAUAAGGCAAAGAUACAAAUGUAACU------- .((((((((((((((......))))))).))))))).((((((((.......))))))..((((.....)))).....-----.......))..((.(((....))).))------- ( -21.90) >DroYak_CAF1 27055 102 + 1 CUAUUUUACCAGUUUUCCAAGGCACUGGCUGAGGUGCACAGCUGGUGGUUUUCUAGCUAGAUGGAGUAUCUGCAAGUU-----GG---AGCCAAAGAUA----UGUAACUGGUA--- ......((((((((.((...(((.(..(((.((((((.((.(((((((....))).)))).))..))))))...))).-----.)---.)))...))..----...))))))))--- ( -32.90) >consensus CCAUUUCACCAGUUUUCCAAGGGACUGGCUGAGGUGCGAAGCUGGUGGUUUUCUAGCUAGAUAGAUUAUCUAUAAGUU_____AG___UGCCAAAAAUA____UGUAACU_GUA___ .(((((((((((((((....)))))))).)))))))...((((.(((((..((((......))))..))).)).))))....................................... (-18.88 = -17.80 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:12 2006