Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,534,485 – 12,534,603 |
Length | 118 |
Max. P | 0.906722 |
Location | 12,534,485 – 12,534,603 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 96.61 |
Mean single sequence MFE | -34.56 |
Consensus MFE | -33.66 |
Energy contribution | -33.30 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.08 |
Mean z-score | -1.32 |
Structure conservation index | 0.97 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12534485 118 - 27905053 AUGCUUCUUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA .(((..(((((((((((.(((.(((((.((((.....)))).))))).)))))).(((((((((....))))).(((((((((...)))).)))))...)))).))))))).)..))) ( -36.00) >DroSec_CAF1 23450 118 - 1 AUGCUUCUUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA .(((..(((((((((((.(((.(((((.((((.....)))).))))).)))))).(((((((((....))))).(((((((((...)))).)))))...)))).))))))).)..))) ( -36.00) >DroSim_CAF1 23029 118 - 1 AUGCUUCCUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUUCA ...((.(((((.((((.((((((((((.((((.....)))).))))).(((..((((..(((((....))))).))))..)))......)))))..))))..))))).))........ ( -36.80) >DroEre_CAF1 21244 118 - 1 AUGCUUCUUUGUCUGGAUAAUGUUUCUGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAACGGUUGUUGUCAGCCUUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA .(((..(((((((((((.(((.(((((.((((.....)))).))))).)))))).(((((((((....))))).(((((((((...)))).)))))...)))).))))))).)..))) ( -33.60) >DroYak_CAF1 20402 118 - 1 AUGCUCCUUUGUCUGGAUAAUGUUUCUGUCUGAGUUGAGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCUUUUAAGGAUAUAAUCCAUUAGGCCAGUUCAAGGCAGAUGUUGCA .(((..(((((((((((.(((.(((((.(((.......))).))))).)))))).(((((((((....)))))......((((...)))).........)))).))))))).)..))) ( -30.40) >consensus AUGCUUCUUUGUCUGGAUAAUGUUUCCGUCUGAGUUUCGGAGGGAGGAGUUUCUGGAGCGGUUGUUGUCAGCCAUUUAAGGAUAUAAUCCAUUAGACCAGUUCAAGGCAGAUGUUGCA ...((.(((((.((((.((((...(((.((((.....)))).)))(((..((((.(((.(((((....))))).))).)))).....)))))))..))))..))))).))........ (-33.66 = -33.30 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:11 2006