Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,526,995 – 12,527,089 |
Length | 94 |
Max. P | 0.598579 |
Location | 12,526,995 – 12,527,089 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.79 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -17.63 |
Energy contribution | -18.63 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.24 |
Structure conservation index | 0.68 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12526995 94 - 27905053 AUUGUCUUCUGGUAGUUUGGUUUUUUUU-------------AGGGAACCGUUUUUUAUGUG--UGCGGCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC ......((((((..(((((((((((...-------------.)))))))((((((((((((--(((......)).)))))))))))))......))))....)))))). ( -30.50) >DroSec_CAF1 16023 92 - 1 AUUGUCUUCUGGUCGUUUGGUUUUU--U-------------AGGGAACCGUGUUUUAUGUG--CGCUUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC ......((((((.....((((((((--(-------------(((....)((.(((((((((--.(((....)))..))))))))).)).)))))))))))..)))))). ( -25.60) >DroSim_CAF1 15691 91 - 1 AUUGUCUUCUGGUCGUUUGGUUUUU--U--------------GGGAACCGUUUUUUAUGUG--CGCGUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC ......((((((.((((((((((..--.--------------..)))))((((((((((((--.((......))..))))))))))))......))).))..)))))). ( -27.90) >DroEre_CAF1 13648 93 - 1 AUUGUCUUCUGGUCGUUUGGUCUUU-UU-------------AGGGAACCGUUUUUUAUGUG--AGCGUCUGAGCAACACAUGAGAAACAUUAAAAAGUCGUUCCAGAGG .....(((((((.....(((.((((-((-------------(((....)((((((((((((--.((......))..)))))))))))).)))))))))))..))))))) ( -29.30) >DroYak_CAF1 12772 93 - 1 AUUGUCUUCUGGUCGUUUGGUUUUU-UU-------------AGGGAACCGUUUUUUAUGUG--AGCGUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUUCAGAGG .....(((((((.(((((((((((.-..-------------..))))))((((((((((((--.((......))..))))))))))))......))).))..))))))) ( -27.70) >DroAna_CAF1 15848 108 - 1 AUUGUCUUUUGGUUUUUUCCUCUUU-UUUUUUUUAACUCGAAAGGAACUGUUUUUUAAGGCAAAACAUGAGAGCAACACAUGAGAUACAUUAAAAAAUCAUUCGAGAUG ...(((((.(((((((((.(((((.-....((((..((..(((((.....)))))..))..))))...)))))......(((.....))).)))))))))...))))). ( -14.90) >consensus AUUGUCUUCUGGUCGUUUGGUUUUU_UU_____________AGGGAACCGUUUUUUAUGUG__AGCGUCUGAGCAACACAUGAGAAACAUUAAAAAAUCGUUCCAGAGC .......(((((.....((((((((.................((...))((((((((((((...((......))..))))))))))))....))))))))..))))).. (-17.63 = -18.63 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:04 2006