Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,521,966 – 12,522,096 |
Length | 130 |
Max. P | 0.584346 |
Location | 12,521,966 – 12,522,056 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 92.04 |
Mean single sequence MFE | -20.50 |
Consensus MFE | -17.50 |
Energy contribution | -17.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.85 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12521966 90 - 27905053 GGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUUCUUC--CGACGU------------ .....................(((((((((.......)))))..((((..........)))).))))..((..((.....))..--))....------------ ( -20.20) >DroPse_CAF1 9847 97 - 1 GGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUUCUUC--CGACGUA---CC--GACG ((...................(((((((((.......)))))..((((..........)))).))))..((..((.....))..--)).....---))--.... ( -21.50) >DroYak_CAF1 7808 90 - 1 GGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUUCUUC--CGACGU------------ .....................(((((((((.......)))))..((((..........)))).))))..((..((.....))..--))....------------ ( -20.20) >DroMoj_CAF1 2554 102 - 1 GGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUCCAUUUUCGACU--GCUCCUUCUCG (((..................(((((((((.......)))))..((((..........)))).))))..((((((.......))))))...--)))........ ( -20.70) >DroAna_CAF1 11462 90 - 1 GGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUUCUUC--CGACGU------------ .....................(((((((((.......)))))..((((..........)))).))))..((..((.....))..--))....------------ ( -20.20) >DroPer_CAF1 13887 90 - 1 GGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUUCUUC--CGACGU------------ .....................(((((((((.......)))))..((((..........)))).))))..((..((.....))..--))....------------ ( -20.20) >consensus GGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUUCUUC__CGACGU____________ ..................((((((((((((.......)))))..((((..........)))).))))...)))............................... (-17.50 = -17.50 + 0.00)
Location | 12,521,976 – 12,522,096 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.19 |
Mean single sequence MFE | -30.08 |
Consensus MFE | -27.17 |
Energy contribution | -27.17 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.09 |
Structure conservation index | 0.90 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12521976 120 - 27905053 CAGCUCGAGUCGAGUGCAGGAAGUGAAACGUAGGAAGUGUGGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUU ...((((....(((((...((((((....((.((........)).))..)))))).)))))(((((((((.......)))))..((((..........)))).))))..))))....... ( -31.90) >DroPse_CAF1 9864 116 - 1 ----UCGAGUGGAGUGCAGGAAGUGGAACGUAGGAAGUGUGGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUU ----(((....(((((...((((((....((.((........)).))..)))))).)))))(((((((((.......)))))..((((..........)))).))))..)))........ ( -29.60) >DroEre_CAF1 8581 120 - 1 CAGCUCGAGUCGAGUGCAGGAAGUGAAACGUAGGAAGUGUGGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUU ...((((....(((((...((((((....((.((........)).))..)))))).)))))(((((((((.......)))))..((((..........)))).))))..))))....... ( -31.90) >DroYak_CAF1 7818 120 - 1 CAGCUCGAGUCGAGUGCAGGAAGUGAAACGUAGGAAGUGUGGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUU ...((((....(((((...((((((....((.((........)).))..)))))).)))))(((((((((.......)))))..((((..........)))).))))..))))....... ( -31.90) >DroAna_CAF1 11472 110 - 1 ----------CGAGUGCAGGAAGUGAAACGUAGGAAGUGUGGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUU ----------.(((((...((((((....((.((........)).))..)))))).)))))(((((((((.......)))))..((((..........)))).))))..(....)..... ( -26.90) >DroPer_CAF1 13897 116 - 1 ----CCGAGUGGAGUGCAGGAAGUGGAACGUAGGAAGUGUGGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUU ----.((....(((((...((((((....((.((........)).))..)))))).)))))(((((((((.......)))))..((((..........)))).))))..))......... ( -28.30) >consensus ____UCGAGUCGAGUGCAGGAAGUGAAACGUAGGAAGUGUGGCCAACAACAUUUUAUACUCGAGCGCAUAAUAUUCAUAUGCAGGCCAUAAAAAACUUUGGCAGCUCAACGAGAGAUCUU ...........(((((...((((((....((.((........)).))..)))))).)))))(((((((((.......)))))..((((..........)))).))))..(....)..... (-27.17 = -27.17 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:01 2006