Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,796,045 – 1,796,135 |
Length | 90 |
Max. P | 0.977606 |
Location | 1,796,045 – 1,796,135 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 80.17 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -19.65 |
Energy contribution | -19.15 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.20 |
Mean z-score | -3.62 |
Structure conservation index | 0.65 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1796045 90 + 27905053 AGGAACAAAAACAGGC-GCCCA---GGAAAUUAACCAACAUU-UGGGCAGCUAAUUGGCUGCCUAAAUGGCUCAAGCUGCUCGUGUGGAAAUCCA .(((.((...((..((-((...---((.......))..((((-(((((((((....)))))))))))))......)).))..)).))....))). ( -31.60) >DroVir_CAF1 124109 86 + 1 AGUGGG--------GG-GCCCAAAAUGAAAUUAACCAACAUUUUGGGCAGCUAAUUGGUUGCCUAAAUGGCCCAAGCAGCUCGUGUGGAAAUCCA ..((((--------..-((((((((((...........))))))))))((((..((((..(((.....)))))))..))))..........)))) ( -29.40) >DroPse_CAF1 95910 90 + 1 AGGAAGAAA-ACAUGCUAGCCA---GGAAAUUAACCAACAUU-UGGGUAGCUAAUUGGCUGCCUAAAUGGCUCAAGUUGCUCGUGUGGAAAUCCA .(((.....-.(((((.(((..---((.......))..((((-(((((((((....))))))))))))).........))).)))))....))). ( -30.40) >DroGri_CAF1 110022 93 + 1 ACUGGCAACAAUAAGG-GGCCUAAAUGAAAUUAACCAACAUU-UGGGCAGCUAAUUGGUCGCCUAAAUGGUCCAAGCUGCUCGUGUGGAAAUCCA ...(((..(.....).-.))).............(((.(((.-.((((((((...(((..(((.....))))))))))))))))))))....... ( -27.80) >DroMoj_CAF1 118508 81 + 1 AGUGGA-------------UCCAAGCGAAAUUAACCAACAUU-UGGGCAGCUAAUUGGUUGCCUAAAUGGCCCAAGCAGCUCGUGUGGAAAUCCA ..((((-------------((((.((((..........((((-(((((((((....)))))))))))))((....))...)))).))))..)))) ( -32.20) >DroPer_CAF1 98501 90 + 1 AGGAAGAAA-ACAUGCUAGCCA---GGAAAUUAACCAACAUU-UGGGUAGCUAAUUGGCUGCCUAAAUGGCUCAAGUUGCUCGUGUGGAAAUCCA .(((.....-.(((((.(((..---((.......))..((((-(((((((((....))))))))))))).........))).)))))....))). ( -30.40) >consensus AGGAAGAAA_ACA_GC_GGCCA___GGAAAUUAACCAACAUU_UGGGCAGCUAAUUGGCUGCCUAAAUGGCCCAAGCUGCUCGUGUGGAAAUCCA ..................................(((.(((...((((((((...(((..(((.....))))))))))))))))))))....... (-19.65 = -19.15 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:13 2006