Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,521,387 – 12,521,509 |
Length | 122 |
Max. P | 0.999366 |
Location | 12,521,387 – 12,521,490 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 95.62 |
Mean single sequence MFE | -24.19 |
Consensus MFE | -24.11 |
Energy contribution | -24.11 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 1.00 |
SVM decision value | 3.54 |
SVM RNA-class probability | 0.999366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12521387 103 + 27905053 ----UCUCUCUUUCUGCCCCGCUGGAUGUAUACGUGGAUAUAAAUGUGCAUAUAUCUCUGGCUCUUGCUCACUUUUUAUAUUUGCGCCGGCGAACUUCAAUUGUUCA ----................(((((.......((..((((((((.(((...........(((....))))))..))))))))..)))))))((((.......)))). ( -24.11) >DroSec_CAF1 10371 107 + 1 UCCCUCUCUCUUUCUGCCCCGCUGGAUGUAUACGUGGAUAUAAAUGUGCAUAUAUCUCUGGCUCUUGCUCACUUUUUAUAUUUGCGCCGGCGAACUUCAAUUGUUCA ....................(((((.......((..((((((((.(((...........(((....))))))..))))))))..)))))))((((.......)))). ( -24.11) >DroSim_CAF1 10118 105 + 1 U--CUCUCUCUUUCUGCCCCGCUGGAUGUAUACGUGGAUAUAAAUGUGCAUAUAUCUCUGGCUCUUGCUCACUUUUUAUAUUUGCGCCGGCGAACUUCAAUUGUUCA .--.................(((((.......((..((((((((.(((...........(((....))))))..))))))))..)))))))((((.......)))). ( -24.11) >DroEre_CAF1 7938 101 + 1 ------UCUCUUUCUGUCCCGCUGGAUAUAUACGUGGAUAUAAAUGUGCAUAUAUCUCUGGCUCUUGCUCACUUUUUAUAUUUGCGCCGGCGAACUUCAAUUGUUCA ------..............(((((.......((..((((((((.(((...........(((....))))))..))))))))..)))))))((((.......)))). ( -24.11) >DroYak_CAF1 7260 101 + 1 ------UCUCUUUCUGCCCCGCUGGAUAUAUACGUGGAUAUAAAUGUGCAUAUAUCUCGGGCUCUUGCUCACUUUUUAUAUUUGCGCCGGCGAACUUCAAUUGUUCA ------.........(((.(((.((((((((((((........))))..)))))))).((((....)))).............)))..)))((((.......)))). ( -24.50) >consensus ____UCUCUCUUUCUGCCCCGCUGGAUGUAUACGUGGAUAUAAAUGUGCAUAUAUCUCUGGCUCUUGCUCACUUUUUAUAUUUGCGCCGGCGAACUUCAAUUGUUCA ....................(((((.......((..((((((((.(((...........(((....))))))..))))))))..)))))))((((.......)))). (-24.11 = -24.11 + -0.00)
Location | 12,521,417 – 12,521,509 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -24.04 |
Consensus MFE | -15.75 |
Energy contribution | -14.87 |
Covariance contribution | -0.89 |
Combinations/Pair | 1.17 |
Mean z-score | -2.19 |
Structure conservation index | 0.66 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12521417 92 - 27905053 GAUUGUUUGUGUUGGCUGCUGAACAAUUGAAGUUCGCCGGCGCAAAUAUAAA-AAGUGAGCAAGA-GCCAGAGAUAUAUGCACAUUUAUAUCCA ...(((((((((((((....((((.......)))))))))))))))))....-...((.((....-))))(.((((((........))))))). ( -24.60) >DroPse_CAF1 9207 77 - 1 GCUUGUUUGUGUUUGCUGCCGAACAAUUGAAGUUCGCCGGCGAAAAUAUAAAAAAGUGGGCAAAAAGUGCGAGCAGG----------------- .((((((((..(((..((((.(..........((((....))))............).))))..)))..))))))))----------------- ( -22.95) >DroSim_CAF1 10150 92 - 1 GAUUGUUUGUGUUGGCUGCUGAACAAUUGAAGUUCGCCGGCGCAAAUAUAAA-AAGUGAGCAAGA-GCCAGAGAUAUAUGCACAUUUAUAUCCA ...(((((((((((((....((((.......)))))))))))))))))....-...((.((....-))))(.((((((........))))))). ( -24.60) >DroEre_CAF1 7966 92 - 1 GAUUGUUUGUGUUGGCUGCUGAACAAUUGAAGUUCGCCGGCGCAAAUAUAAA-AAGUGAGCAAGA-GCCAGAGAUAUAUGCACAUUUAUAUCCA ...(((((((((((((....((((.......)))))))))))))))))....-...((.((....-))))(.((((((........))))))). ( -24.60) >DroYak_CAF1 7288 92 - 1 GAUUGUUUGUGUUGGCUGCUGAACAAUUGAAGUUCGCCGGCGCAAAUAUAAA-AAGUGAGCAAGA-GCCCGAGAUAUAUGCACAUUUAUAUCCA ...(((((((((((((....((((.......)))))))))))))))))....-....(.((....-)).)(.((((((........))))))). ( -24.00) >DroPer_CAF1 13264 76 - 1 GCUUGUUUGUGUUUGCUGCCGAACAAUUGAAGUUCGCCGGCGAAAAUAUAAA-AAGUGGGCAAAAAGUGCGAGCAGG----------------- .((((((((..(((..((((.(..........((((....))))........-...).))))..)))..))))))))----------------- ( -23.50) >consensus GAUUGUUUGUGUUGGCUGCUGAACAAUUGAAGUUCGCCGGCGCAAAUAUAAA_AAGUGAGCAAGA_GCCAGAGAUAUAUGCACAUUUAUAUCCA ..(((((..(.(((((((.(((((.......))))).)))).)))..........)..)))))............................... (-15.75 = -14.87 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:59 2006