| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,519,573 – 12,519,666 |
| Length | 93 |
| Max. P | 0.614981 |
| Location | 12,519,573 – 12,519,666 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -28.88 |
| Consensus MFE | -19.37 |
| Energy contribution | -19.95 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.614981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12519573 93 + 27905053 CUUUUAAUAACUUUAUAAUGGCGUGUUGCAUCACGCGCCGCAAACUUCGUGUGGACACGCCCCCUUUAGGGUAGGAUGGGAUGGGGCAUACCC--------- ....................(((((......)))))(((.((..(((((((....)))((((......))))..)).))..)).)))......--------- ( -26.50) >DroPse_CAF1 7444 90 + 1 CUUUUAAUAACUUUAUAAUGGCGUGUUGCAUCACGCGUUGCA-ACUUCGUGUGGACACGCCCACUCG-------GAGG----GGGGCGCACCUUGCCCCAAC ..........((((.....((((((((....((((((.....-....))))))))))))))......-------))))----((((((.....))))))... ( -32.60) >DroSec_CAF1 8611 91 + 1 CUUUUAAUAACUUUAUAAUGGCGUGUUGCAUCACGCGCCGCAAACUUCGUGUGGACACGCCUCCUUUCGGGUAGGAUGGGAUGAGGCAUAC----------- ...................(((((((......))))))).........(((....)))(((((.(..((.......))..).)))))....----------- ( -26.20) >DroEre_CAF1 6166 93 + 1 CUUUUAAUAACUUUAUAAUGGCGUGUUGCAUCACGCGCUGCAAGCUUCGUGUGGACACGCC-CCUUCUGGGUACGAUGGGUUGGGGCACACCCC-------- ...................((((((((....((((((..(....)..))))))))))))))-(((..((....))..)))..((((....))))-------- ( -28.80) >DroYak_CAF1 5457 92 + 1 CUUUUAAUAACUUUAUAAUGGCGUGUUGCAUCACGCGCUGCAAACUUCGUGUGGACACGCCCCCUUUUGGGUAGCCUGGGUUGGGGCA--CCCC-------- ...................((((((((....((((((..(....)..)))))))))))))).......((((.((((......)))))--))).-------- ( -31.00) >DroPer_CAF1 11375 88 + 1 CUUUUAAUAACUUUAUAAUGGCGUGUUGCAUCACGCGCUGCA-ACUUCGUGUGGACACGCCCACUCG-------GAGG------GGCGCACCUUACCCCAAC ....................(((((......)))))((.((.-.(((((.((((......)))).))-------))).------.))))............. ( -28.20) >consensus CUUUUAAUAACUUUAUAAUGGCGUGUUGCAUCACGCGCUGCAAACUUCGUGUGGACACGCCCCCUUU_GGGUAGGAUGGG_UGGGGCACACCC_________ ...................((((((((....((((((..(....)..)))))))))))))).....................(((.....)))......... (-19.37 = -19.95 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:57 2006