Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,514,419 – 12,514,594 |
Length | 175 |
Max. P | 0.875599 |
Location | 12,514,419 – 12,514,534 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 93.74 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -20.36 |
Energy contribution | -20.76 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -1.21 |
Structure conservation index | 0.88 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12514419 115 + 27905053 AGCCAACAUUUACUGACUCGUGAUUUAAUGUUGCGCUACCGAAAAGUUUUCUUUGUUUAUGGUGAAACUUAAAUUGGCUAAGUGCCAGAAAUAUCUUUAAAUUAUUCACCUACUU (((((((((((((......))))....)))))).))).....((((....))))......((((((........((((.....))))((....)).........))))))..... ( -22.10) >DroSec_CAF1 3494 115 + 1 AGCCAACAUUUACUGACUUGUGAUUUAAUGUUGCGCUACCGAAAAGUUUUGUUGGUUUAUGGCGAAACUUAAAUUGGCUAAGUGCCACAAAUAUCUUUAAAUAUUUUACCUACUU (((((((((((((......))))....)))))).)))......(((((((((((.....)))))))))))....((((.....))))............................ ( -23.70) >DroSim_CAF1 3573 115 + 1 AGCCAACAUUUACUGACUCGUGAUUUAAUGUUGCGCUACCGAAAAGUUUUCUUGGUUUAUGGCGAAACUUAAAUUGGCUAAGUGCCACAAAUAUCUUUAAAUAUUUUACCUACUU ((((((...((((......))))(((((.(((.(((((((((.........)))))....)))).))))))))))))))(((((....((((((......))))))....))))) ( -21.10) >DroEre_CAF1 931 115 + 1 AGCCAACAUUUACUGAGUCGUGAUUUAAUGUUGCGCUACAGAAAAGUUUUCUUUGUUUAUGGCGAAACUUAAAUUGGCUAAGUGCCACAAAUAUCUGUAAAUUAUUCACCUACUU .((((((((((((......))))....)))))).))((((((.(((((((((........)).)))))))....((((.....))))......))))))................ ( -24.30) >DroYak_CAF1 357 114 + 1 AGCCAACAUUUACUAAGUCGUGAUUUAAUGUUGCGCUACCGAAAAGUUUUGUUUGUUUAUGGCGAAACUUAAAUUGGCUAAGUGCCACAAAUAUCUUUAAAUUAUUCACCCAUU- (((((((((((((......))))....)))))).)))...(((((((((((((.......))))))))))....((((.....)))).................))).......- ( -24.30) >consensus AGCCAACAUUUACUGACUCGUGAUUUAAUGUUGCGCUACCGAAAAGUUUUCUUUGUUUAUGGCGAAACUUAAAUUGGCUAAGUGCCACAAAUAUCUUUAAAUUAUUCACCUACUU (((((((((((((......))))....)))))).)))...(((.(((((....(((((.((((...(((((.......))))))))).))))).....))))).)))........ (-20.36 = -20.76 + 0.40)
Location | 12,514,494 – 12,514,594 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.46 |
Mean single sequence MFE | -21.28 |
Consensus MFE | -13.84 |
Energy contribution | -14.52 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.19 |
Mean z-score | -1.70 |
Structure conservation index | 0.65 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12514494 100 + 27905053 GGCUAAGUGCCAGAAAUAUCUUUAAAUUAUUCACCUACUUACAUAUUUACGGAAAUGUUC-CUUGGUGUAUUUAAAGACAUUUUAUAGAUCUU--------UGU--------UUGUU--- (((.....))).(((((.(((((((((....((((.....((((.((....)).))))..-...)))).))))))))).))))).........--------...--------.....--- ( -21.50) >DroSec_CAF1 3569 95 + 1 GGCUAAGUGCCACAAAUAUCUUUAAAUAUUUUACCUACUUACAUAUUUACAGAAAUGUUC-CUUGGUGUAUUUGAAGACGUUUUAUAGAUAUU--------UGA---------------- (((.....))).(((((((((..(((..((((.......(((((....(((....)))..-....)))))....))))..)))...)))))))--------)).---------------- ( -22.50) >DroSim_CAF1 3648 95 + 1 GGCUAAGUGCCACAAAUAUCUUUAAAUAUUUUACCUACUUACAUAUUUACGGAAAUGUUC-CUUGGUGUAUUUGAAGACAUUUUAUAGAUAUU--------UGA---------------- (((.....))).(((((((((..((((.((((.......(((((......(((.....))-)...)))))....)))).))))...)))))))--------)).---------------- ( -20.20) >DroEre_CAF1 1006 120 + 1 GGCUAAGUGCCACAAAUAUCUGUAAAUUAUUCACCUACUUGCAUAUUUACGGCGAUGUUGCAUUGGUGUAUUUGAAAACAUUUUGUAGAUCUUAUUAGACUUGAGAUUUUUUUUGUCUCA (((.....)))(((((......(((((....((((....((((((((......)))).))))..)))).))))).......)))))...............((((((.......)))))) ( -23.42) >DroYak_CAF1 432 107 + 1 GGCUAAGUGCCACAAAUAUCUUUAAAUUAUUCACCCAUU-----CUUCACGGAAAUGUUGCAUUGGUGUAUUUAAAAGCAUUUCAUAGAUCCUAAAAGAUUUAAGAUGGUUU-------- (((.....))).......................(((((-----.......((((((((...((((.....)))).)))))))).((((((......)))))).)))))...-------- ( -18.80) >consensus GGCUAAGUGCCACAAAUAUCUUUAAAUUAUUCACCUACUUACAUAUUUACGGAAAUGUUC_CUUGGUGUAUUUGAAGACAUUUUAUAGAUCUU________UGA________________ (((.....)))..((((.(((((((((....((((.....((((.((....)).))))......)))).))))))))).))))..................................... (-13.84 = -14.52 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:51 2006