Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,514,061 – 12,514,179 |
Length | 118 |
Max. P | 0.712788 |
Location | 12,514,061 – 12,514,179 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -26.03 |
Energy contribution | -26.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.89 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12514061 118 + 27905053 UUCCAGCUUUCCCAUGCCCCAUCGAAAUGGAAAAUGGA-AAUGCCAACAGUUGCGACUGGGAAAACAACAGCAAGGAGGAGCAAGUGGAGCAAAACAAAACAAAGCUGAAAUGCGGAAA ((((.((((..((.((((((((((((.(((...((...-.)).)))....)).))).)))).........))).))..))))......................((......)))))). ( -28.10) >DroSec_CAF1 3149 112 + 1 UUCCAGCUUUCCCAUGCCCCCUCGAAA-------UGGAAAAUGCCAACAGUUGCGACUGGGAAAACAACAGCAAGGAGGAGCAAGUGGAGCAAAACAAAACAAAGCUGAAAUGCGGAAA ((((.((((..(..(((..((((....-------(((......)))....((((...((......))...)))).)))).))).)..)))).............((......)))))). ( -27.90) >DroSim_CAF1 3213 119 + 1 UUCCAGCUUUCCCAUGCUCCCUCGGAAUGGAAAAUGGAAAAUGCCAACAGUUGCGACUGGGAAAACAACAGCAAGGAGGAGCAAGUGGAGCAAAACAAAACAAAGCUGAAAUGCGGAAA ((((.((((..(..((((((..(...........(((......)))....((((...((......))...)))))..)))))).)..)))).............((......)))))). ( -31.30) >consensus UUCCAGCUUUCCCAUGCCCCCUCGAAAUGGAAAAUGGAAAAUGCCAACAGUUGCGACUGGGAAAACAACAGCAAGGAGGAGCAAGUGGAGCAAAACAAAACAAAGCUGAAAUGCGGAAA ((((.((((..(..(((.((..(...........(((......)))....((((...((......))...)))))..)).))).)..)))).............((......)))))). (-26.03 = -26.03 + 0.00)
Location | 12,514,061 – 12,514,179 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -28.89 |
Energy contribution | -28.67 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 0.98 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12514061 118 - 27905053 UUUCCGCAUUUCAGCUUUGUUUUGUUUUGCUCCACUUGCUCCUCCUUGCUGUUGUUUUCCCAGUCGCAACUGUUGGCAUU-UCCAUUUUCCAUUUCGAUGGGGCAUGGGAAAGCUGGAA ........((((((((((.........((((.((.((((..((....((....))......))..)))).))..))))..-(((((.((((((....)))))).))))))))))))))) ( -29.50) >DroSec_CAF1 3149 112 - 1 UUUCCGCAUUUCAGCUUUGUUUUGUUUUGCUCCACUUGCUCCUCCUUGCUGUUGUUUUCCCAGUCGCAACUGUUGGCAUUUUCCA-------UUUCGAGGGGGCAUGGGAAAGCUGGAA ........((((((((((((........))((((..((((((..(((((..(((......)))..))))....(((......)))-------....)..)))))))))))))))))))) ( -29.20) >DroSim_CAF1 3213 119 - 1 UUUCCGCAUUUCAGCUUUGUUUUGUUUUGCUCCACUUGCUCCUCCUUGCUGUUGUUUUCCCAGUCGCAACUGUUGGCAUUUUCCAUUUUCCAUUCCGAGGGAGCAUGGGAAAGCUGGAA ........((((((((((((........))((((..((((((..(((((..(((......)))..))))....(((......)))...........)..)))))))))))))))))))) ( -30.10) >consensus UUUCCGCAUUUCAGCUUUGUUUUGUUUUGCUCCACUUGCUCCUCCUUGCUGUUGUUUUCCCAGUCGCAACUGUUGGCAUUUUCCAUUUUCCAUUUCGAGGGGGCAUGGGAAAGCUGGAA ........((((((((((((........))((((..((((((..(((((..(((......)))..))))....(((......)))...........)..)))))))))))))))))))) (-28.89 = -28.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:49 2006