Locus 4780

Sequence ID 3R_DroMel_CAF1
Location 12,512,154 – 12,512,266
Length 112
Max. P 0.998109
window7840

overview

Window 0

Location 12,512,154 – 12,512,266
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.88
Mean single sequence MFE -26.30
Consensus MFE -23.04
Energy contribution -22.32
Covariance contribution -0.72
Combinations/Pair 1.14
Mean z-score -2.27
Structure conservation index 0.88
SVM decision value 3.01
SVM RNA-class probability 0.998109
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12512154 112 - 27905053
ACUUGCAAAAUGC---UCAAAAGCAAAA-GC----GAACAGCUAAGAAUUAUUUACUUCAAAUUCCAAGUGCAACAUAGAAUUCGUGCAGCGGCAGCAACAUGCAAUGCACGGCAGCAAC
..((((....(((---(....))))...-((----.....(((..(((((..........)))))..))).............((((((...(((......)))..)))))))).)))). ( -25.50)
>DroSec_CAF1 1309 112 - 1
ACUUGCAAAAUGC---UCAAAAGCAAAA-GC----GAACAGCUAAGAAUUAUUUACUUCAAAUUCCAAGUGCAACAUAGAAUUCGUGCAGCGGCAGCAACAUGCAAUGCACAGCAGCAAC
..((((....(((---(....))))...-..----.....(((..(((((...(((((........)))))........)))))(((((...(((......)))..)))))))).)))). ( -24.60)
>DroSim_CAF1 1337 112 - 1
ACUUGCAAAAUGC---UCAAAAGCAAAA-GC----GAACAGCUAAGAAUUAUUUACUUCAAAUUCCAAGUGCAACAUAGAAUUCGUGCAGCGGCAGCAACAUGCAAUGCACGGCAGCAAC
..((((....(((---(....))))...-((----.....(((..(((((..........)))))..))).............((((((...(((......)))..)))))))).)))). ( -25.50)
>DroAna_CAF1 2941 116 - 1
ACUUGCAAAAUGCUACUCAAACGCAAAGCAA----GAACAGCCAAGAAUUAUUUACUUCAAAUUCCGAGUGCAACAUAGAAUUCGUGCAGCAGCAGCAACAUGCAAUGCACGGCAGCAAC
.(((((....(((.........)))..))))----)....(((..(((((...(((((........)))))........)))))(((((...(((......)))..))))))))...... ( -26.90)
>DroPer_CAF1 3276 116 - 1
ACUUGCAAAAUGC---UCAAAAGCAAAA-GCCAAAGAACGGCCAAGAAUUAUUUACUUCGAAUUCCAAGUGCAACAUAGAAUUCGUGCGGCGGCAGCAACAUGCUAUGCACGGCAGCAAC
..((((....(((---(....))))...-(((...........................((((((...(((...))).))))))(((((..((((......)))).)))))))).)))). ( -29.00)
>consensus
ACUUGCAAAAUGC___UCAAAAGCAAAA_GC____GAACAGCUAAGAAUUAUUUACUUCAAAUUCCAAGUGCAACAUAGAAUUCGUGCAGCGGCAGCAACAUGCAAUGCACGGCAGCAAC
..((((....(((.........)))...............(((..(((((...(((((........)))))........)))))(((((...(((......)))..)))))))).)))). (-23.04 = -22.32 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:42 2006