Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,511,975 – 12,512,118 |
Length | 143 |
Max. P | 0.933154 |
Location | 12,511,975 – 12,512,085 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.82 |
Mean single sequence MFE | -41.44 |
Consensus MFE | -35.42 |
Energy contribution | -35.34 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.78 |
Structure conservation index | 0.85 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12511975 110 - 27905053 --UUGGGAGGGGGCAGCUACAGCAGCGGCAGCUAAAACGCCGAUAAAAGCAACGAUGGCAGUUCAGCUUCGUUUGCUGCUCAGGCGGCCAUGUUGCUGAUUGCCAUUGCC--------GU --..((.((..((((((....))..(((((((.....((((......((((((((.(((......)))))).))))).....)))).....)))))))..)))).)).))--------.. ( -41.80) >DroSec_CAF1 1124 112 - 1 UCUUGGGAGGGGGCAGCUACAGCAGCGGCAGCUAAAACGCCGAUAAAAGCAACGAUGGCAGUUCAGCUUCGUUUGCUGCUCAGGCGGCCAUGUUGCUGAUUGCCAUUGCC--------GU ....((.((..((((((....))..(((((((.....((((......((((((((.(((......)))))).))))).....)))).....)))))))..)))).)).))--------.. ( -41.80) >DroSim_CAF1 1153 111 - 1 U-UUGGGAGGGGGCAGCUACAGCAGCGGCAGCUAAAACGCCGAUAAAAGCAACGAUGGCAGUUCAGCUUCGUUUGCUGCUCAGGCGGCCAUGUUGCUGAUUGCCAUUGCC--------GU .-..((.((..((((((....))..(((((((.....((((......((((((((.(((......)))))).))))).....)))).....)))))))..)))).)).))--------.. ( -41.80) >DroAna_CAF1 2755 111 - 1 CC---------AACAGCAGCAGCAGCAGCAGCUAAAACGCCGAUAAAAGCAACGAUGGCAGUUCAGCUUCGUUUGCUGCUCAGGCGGCCAUGUUGCUGAUUGCCAUUGCCCGUUGUAUGU .(---------(((.((((..(((((((((((.....((((......((((((((.(((......)))))).))))).....)))).....))))))).))))..))))..))))..... ( -43.30) >DroPer_CAF1 3122 103 - 1 ---------GGCGCGGCAGCAGCAGCGGCAGCUAAAACGCCGAUAAAAGCAACGAUGGUAGUUCAGCUUCGUUUGCUGCUCAGGCGGCCAUGUUGCAGAUUGCCAUUGCC--------AU ---------((((.((((((((((..(((........((((......((((((((.(((......)))))).))))).....))))))).))))))....))))..))))--------.. ( -38.50) >consensus __UUGGGAGGGGGCAGCUACAGCAGCGGCAGCUAAAACGCCGAUAAAAGCAACGAUGGCAGUUCAGCUUCGUUUGCUGCUCAGGCGGCCAUGUUGCUGAUUGCCAUUGCC________GU ...............((....(((((((((((.....((((......((((((((.(((......)))))).))))).....)))).....))))))).))))....))........... (-35.42 = -35.34 + -0.08)
Location | 12,512,007 – 12,512,118 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.72 |
Mean single sequence MFE | -26.25 |
Consensus MFE | -21.98 |
Energy contribution | -21.78 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.11 |
Mean z-score | -1.05 |
Structure conservation index | 0.84 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12512007 111 + 27905053 AGCAGCAAACGAAGCUGAACUGCCAUCGUUGCUUUUAUCGGCGUUUUAGCUGCCGCUGCUGUAGCUGCCCCCUCCCAA------AAAAAAAGACUCCCCUUGGAAACCCCUUCUCA---C .((((((..((.(((((((.((((...............)))).)))))))..)).))))))................------..........(((....)))............---. ( -23.66) >DroSec_CAF1 1156 117 + 1 AGCAGCAAACGAAGCUGAACUGCCAUCGUUGCUUUUAUCGGCGUUUUAGCUGCCGCUGCUGUAGCUGCCCCCUCCCAAGAAACAAAAAAAAAAUCCCCCUUGAAAACCCCCUCUCA---C .((((((..((.(((((((.((((...............)))).)))))))..)).)))))).............((((...................))))..............---. ( -23.17) >DroSim_CAF1 1185 116 + 1 AGCAGCAAACGAAGCUGAACUGCCAUCGUUGCUUUUAUCGGCGUUUUAGCUGCCGCUGCUGUAGCUGCCCCCUCCCAA-AAACAAAAAAAAAAUCCCCCUUGAAAACCCCCUCUCG---C .((((((..((.(((((((.((((...............)))).)))))))..)).))))))................-.....................................---. ( -22.36) >DroAna_CAF1 2795 106 + 1 AGCAGCAAACGAAGCUGAACUGCCAUCGUUGCUUUUAUCGGCGUUUUAGCUGCUGCUGCUGCUGCUGUU---------GGAGCAAUGGUACUCUGCCCC-----AACCACUUCCCCCUCC (((((((.....(((((((.((((...............)))).)))))))((....)))))))))(((---------((.(((.........))).))-----)))............. ( -33.06) >DroPer_CAF1 3154 88 + 1 AGCAGCAAACGAAGCUGAACUACCAUCGUUGCUUUUAUCGGCGUUUUAGCUGCCGCUGCUGCUGCCGCGCC---------------------------GCUGCAUGCCCCCACUC----- .(((((....(((((..(((.......))))))))....(((((..((((.((....)).))))..)))))---------------------------)))))............----- ( -29.00) >consensus AGCAGCAAACGAAGCUGAACUGCCAUCGUUGCUUUUAUCGGCGUUUUAGCUGCCGCUGCUGUAGCUGCCCCCUCCCAA__A_CAAAAAAAAAAUCCCCCUUGAAAACCCCCUCUCA___C .((((((..((.(((((((.((((...............)))).)))))))..)).)))))).......................................................... (-21.98 = -21.78 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:41 2006