| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,511,177 – 12,511,271 |
| Length | 94 |
| Max. P | 0.659161 |
| Location | 12,511,177 – 12,511,271 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 82.36 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -10.46 |
| Energy contribution | -11.28 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12511177 94 + 27905053 AUCUCGACUCAAAUAUUUUGGUCGCUGCGAUUUCAUGCCUGUAAAUUGCAAUUGCAUUUAAUUCUGCCGACGAUUU--UUUCGGACCAACAAACAA .................((((((((((((((((((....)).))))))))...))...............(((...--..)))))))))....... ( -18.50) >DroSec_CAF1 301 93 + 1 AUCUCGUCCCAAAUAUUUUGGUCGCUACGAUUUCAUGCCUGUAAAUUGCAAUUGCAUUUAAUUCUGCCGACCAUUUUUUUUCGGACCAACAAA--- .....((((.(((.....((((((.((.((((..((((.(((.....)))...))))..)))).)).)))))).....))).)))).......--- ( -21.90) >DroSim_CAF1 370 94 + 1 AUCUCGUCCCAAAUAUUUUGGUCGCUGCGAUUUCAUGCCUGUAAAUUGCAAUUGCAUUUAAUUCUGCCGACCAUUU--UUUCGGACCAACAAACAA .....((((.(((.....((((((.((((((((((....)).))))))))...(((........)))))))))...--))).)))).......... ( -22.80) >DroAna_CAF1 1937 89 + 1 AUCUCAUUUCAAAUAUUUUGGUUGCUACGAUUUCAUGCCUUCGAAUUGCAAUUGCAUUUAUUU-UGUUUUU-CUCU--UUUUGGACCUUUUUU--- .......((((((......((((((..(((..........)))....))))))(((.......-)))....-....--.))))))........--- ( -8.00) >consensus AUCUCGUCCCAAAUAUUUUGGUCGCUACGAUUUCAUGCCUGUAAAUUGCAAUUGCAUUUAAUUCUGCCGACCAUUU__UUUCGGACCAACAAA___ .....((((.(((.....((((((.((.((((..((((.((((...))))...))))..)))).)).)))))).....))).)))).......... (-10.46 = -11.28 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:37 2006