Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,510,926 – 12,511,059 |
Length | 133 |
Max. P | 0.991570 |
Location | 12,510,926 – 12,511,024 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.10 |
Mean single sequence MFE | -31.72 |
Consensus MFE | -25.92 |
Energy contribution | -25.68 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -2.65 |
Structure conservation index | 0.82 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12510926 98 - 27905053 --------------GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAAAA---AAAAAGGUCGACUUCUGGACG-----GUCAUAAAACAGCU --------------((((......((((((((((((((....)))).)))))))))).(((((.(((((((......---......))))))).).)))))-----)))........... ( -32.80) >DroSec_CAF1 53 95 - 1 --------------GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAA------AAAAGGUCGACUUCUGGACG-----GUCAUAAAACAGCU --------------((((......((((((((((((((....)))).)))))))))).(((((.(((((((....------.....))))))).).)))))-----)))........... ( -33.10) >DroSim_CAF1 122 95 - 1 --------------GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAA------AAAAGGUCGACUUCUGGACG-----GUCAUAAAACAGCU --------------((((......((((((((((((((....)))).)))))))))).(((((.(((((((....------.....))))))).).)))))-----)))........... ( -33.10) >DroAna_CAF1 1652 113 - 1 CUCGCC--GCCGGCGACCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUUUGCGGUUGGCAAAAAAAGAAAAAAGGUCGACUUCUGAACU-----GCCAUAAAACAGCU .(((((--...)))))......((((((((((((((((....)))).)))))))))).((((.....(((((.....((((...........))))....)-----))))..)))).)). ( -33.00) >DroPer_CAF1 1984 109 - 1 AUUCCCAGGCCG--GCCCAAGUGCGUGCCGAAAUAUGAAUUUUCAUAAUUUUUGCACAGUUUGCGGUUUGCAAA---------AAGGUCGACUUCUGAGCGAGAGUGUCAUAAAACAGCU .......(((.(--(((....((((.(((....(((((....)))))......(((.....)))))).))))..---------..))))(((((((.....)))).)))........))) ( -26.60) >consensus ______________GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAA______AAAAGGUCGACUUCUGGACG_____GUCAUAAAACAGCU ......................((((((((((((((((....)))).)))))))))).(((((.(((((((...............))))))).).)))).................)). (-25.92 = -25.68 + -0.24)
Location | 12,510,961 – 12,511,059 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -28.54 |
Consensus MFE | -15.74 |
Energy contribution | -15.74 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.26 |
Mean z-score | -1.89 |
Structure conservation index | 0.55 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12510961 98 + 27905053 ---UUUUUUGCCAACCGCAGACUGUGCGAAAAUUAUGAAAAUUCAUAUUUCCGCACGCACUUGGCC--------------GGGUAAUUUUCCG-UACCU-GCUGUUAUAGAA---UGACA ---......(((((..((.....(((((.((((.((((....)))))))).)))))))..)))))(--------------(((((........-)))))-)..(((((...)---)))). ( -24.30) >DroSec_CAF1 87 96 + 1 -----UUUUGCCAACCGCAGACUGUGCGAAAAUUAUGAAAAUUCAUAUUUCCGCACGCACUUGGCC--------------GGGAAAUUUUCCA-UACCU-GCUGUUAUAGAA---UGACA -----(((((..(((.((((...(((((.((((.((((....)))))))).)))))..........--------------((((....)))).-...))-)).))).)))))---..... ( -22.00) >DroSim_CAF1 156 96 + 1 -----UUUUGCCAACCGCAGACUGUGCGAAAAUUAUGAAAAUUCAUAUUUCCGCACGCACUUGGCC--------------GGGAAAUUUUCCA-UACCU-GCUGUUAUAAAA---UGACA -----(((((..(((.((((...(((((.((((.((((....)))))))).)))))..........--------------((((....)))).-...))-)).))).)))))---..... ( -21.90) >DroAna_CAF1 1687 116 + 1 UCUUUUUUUGCCAACCGCAAACUGUGCGAAAAUUAUGAAAAUUCAUAUUUCCGCACGCACUUGGUCGCCGGC--GGCGAGGGGGAAUUUUCCG-UACCU-GCCGUCGGAAAACUGUCGCA ......(((((.....)))))..(((((.((((.((((....)))))))).)))))((...((((..(((((--(((.(((.(((....))).-..)))-))))))))...))))..)). ( -40.70) >DroPer_CAF1 2021 106 + 1 ------UUUGCAAACCGCAAACUGUGCAAAAAUUAUGAAAAUUCAUAUUUCGGCACGCACUUGGGC--CGGCCUGGGAAUUGGAAAAUCUCCGUUACCUUGCCGCAGU---C---CGGUG ------(((((.....)))))..((((..((((.((((....))))))))..)))).((((.((((--((((..(((...((((.....))))...))).))))..))---)---))))) ( -33.80) >consensus _____UUUUGCCAACCGCAGACUGUGCGAAAAUUAUGAAAAUUCAUAUUUCCGCACGCACUUGGCC______________GGGAAAUUUUCCG_UACCU_GCUGUUAUAAAA___UGACA .........(((((..((.....(((((.((((.((((....)))))))).)))))))..)))))................(((.....)))...........((((........)))). (-15.74 = -15.74 + 0.00)
Location | 12,510,961 – 12,511,059 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -32.17 |
Consensus MFE | -21.64 |
Energy contribution | -22.44 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.67 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12510961 98 - 27905053 UGUCA---UUCUAUAACAGC-AGGUA-CGGAAAAUUACCC--------------GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAAAA--- (((((---..(.......((-((((.-(((........))--------------))))...)))((((((((((((((....)))).)))))))))).......)..))))).....--- ( -29.70) >DroSec_CAF1 87 96 - 1 UGUCA---UUCUAUAACAGC-AGGUA-UGGAAAAUUUCCC--------------GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAA----- .....---(((((((.(...-.).))-)))))........--------------.(((((.(((((((((((((((((....)))).)))))))))).....))).)))))....----- ( -30.40) >DroSim_CAF1 156 96 - 1 UGUCA---UUUUAUAACAGC-AGGUA-UGGAAAAUUUCCC--------------GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAA----- (((((---.......((.((-((((.-.(((.....))).--------------.)))...)))((((((((((((((....)))).)))))))))).)).......)))))...----- ( -27.94) >DroAna_CAF1 1687 116 - 1 UGCGACAGUUUUCCGACGGC-AGGUA-CGGAAAAUUCCCCCUCGCC--GCCGGCGACCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUUUGCGGUUGGCAAAAAAAGA (((.........(((.((((-(((..-.(((....))).))).)))--).)))(((((....((((((((((((((((....)))).)))))))))).))....))))))))........ ( -41.30) >DroPer_CAF1 2021 106 - 1 CACCG---G---ACUGCGGCAAGGUAACGGAGAUUUUCCAAUUCCCAGGCCG--GCCCAAGUGCGUGCCGAAAUAUGAAUUUUCAUAAUUUUUGCACAGUUUGCGGUUUGCAAA------ ...((---(---((((((((..(((...((..(((....)))..))..))).--))).......((((.(((((((((....)))).))))).)))).....))))))))....------ ( -31.50) >consensus UGUCA___UUCUAUAACAGC_AGGUA_CGGAAAAUUUCCC______________GGCCAAGUGCGUGCGGAAAUAUGAAUUUUCAUAAUUUUCGCACAGUCUGCGGUUGGCAAAA_____ ............................((.......))................(((((.(((((((((((((((((....)))).)))))))))).....))).)))))......... (-21.64 = -22.44 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:36 2006