| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,508,703 – 12,508,843 |
| Length | 140 |
| Max. P | 0.966831 |
| Location | 12,508,703 – 12,508,813 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 71.07 |
| Mean single sequence MFE | -28.34 |
| Consensus MFE | -9.26 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.33 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12508703 110 - 27905053 CGGCCA-UUGCAAAAUGGCCGCCACAAAGGGAAAAUUUAAAUUGAAAAUUUCCGGAAAUAC--AA-CCCACCACC---A-UCAUUCCAGUGCUGAGCGGAGCUAGUGCUCCACAUAGU ((((((-((....)))))))).(((....(((((.(((......))).)))))((((....--..-.........---.-...)))).)))(((.(.(((((....))))).).))). ( -32.01) >DroPse_CAF1 31032 93 - 1 CGGCCA-UUGCAAAAUGGCUGCCACAGAGGGAAAAUUUAAAUUGAAAUUUCCCAGAACUCCCCAGAACUCCUGCC---A-----CCC----CU-----------GGGCG-CACAUAGU .(((((-((....)))))))(((.(((.((((((.(((.....))).)))))).........(((.....)))..---.-----...----))-----------)))).-........ ( -27.00) >DroGri_CAF1 83065 96 - 1 CGGCCAAAUGCAAAAUGGCCGUU-CGUCUGG------CAAAUUGAAAAUUUUCCAAAAUUU--CC-ACAACUACC---GUAUA-UCUAUUUCU-----GUGC--ACCCA-CACAUAGU ((((((.........))))))..-.((.(((------.....((.((((((....))))))--.)-)........---(((((-........)-----))))--..)))-.))..... ( -16.20) >DroSec_CAF1 30160 113 - 1 CGGUCA-UUGCAAAAUGGCCGCCACAGAGGGAAAAUUUAAAUUGAAAAUUUCCCGAAAUAC--AA-ACCACCACCCACCCCCAUCCCAGUGCGGAGCGGAGCUGGUGCU-CACAUAGU ((((((-((....)))))))).....((((((((.(((......))).)))))).......--..-..((((((((.(.(((((....))).)).).)).).))))).)-)....... ( -30.70) >DroSim_CAF1 31133 105 - 1 CGGCCA-UUGCAAAAUGGCCGCCACAGAGGGAAAAUUUAAAUUGAAAAUUUCCCGAAAUAC--AA-ACCACCACC---ACCCACCCCAGUGCG-----GAGCUGGUGCU-CACAUAGU ((((((-((....)))))))).....((((((((.(((......))).)))))).......--..-..(((((.(---.(((((....))).)-----).).))))).)-)....... ( -32.20) >DroYak_CAF1 30886 95 - 1 CGGCCA-UUGCAAAAUGGCCGCCGCAGAGGGAAAAUUUAAAUUGAAAAUUUCCCGAAA--------ACUCCCACC---A-----CCCAGUGCG-----GUGCUGGUGCU-CACAUAGU ((((((-((....))))))))..(((..((((((.(((......))).))))))....--------....(((.(---(-----((......)-----))).)))))).-........ ( -31.90) >consensus CGGCCA_UUGCAAAAUGGCCGCCACAGAGGGAAAAUUUAAAUUGAAAAUUUCCCGAAAUAC__AA_ACCACCACC___A__CA_CCCAGUGCG_____GAGCUGGUGCU_CACAUAGU ((((((.........)))))).......(((((..(((.....)))..)))))................................................................. ( -9.26 = -9.40 + 0.14)
| Location | 12,508,741 – 12,508,843 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.83 |
| Mean single sequence MFE | -33.02 |
| Consensus MFE | -26.01 |
| Energy contribution | -27.07 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12508741 102 + 27905053 U---GGUGGUGGG-UU--GUAUUUCCGGA-AAUUUUCAAUUUAAAUUUUCCCUUUGUGGCGGCCAUUUUGCAAUGGCCGCGACUAUUAUGGCCUCGCAAAAUGGUUCCC .---....(((((-(.--.((.....(((-((.(((......))).)))))....((.(((((((((....))))))))).))...))..))).)))............ ( -33.00) >DroPse_CAF1 31050 102 + 1 U---GGCAGGAGUUCUGGGGAGUUCUGGG-AAAUUUCAAUUUAAAUUUUCCCUCUGUGGCAGCCAUUUUGCAAUGGCCGCGACUGUUAUGGCCUCGCAAAAUGGUC--- .---.((((((..((....))..)).(((-(((.............)))))).))))....((((((((((...(((((..(...)..)))))..)))))))))).--- ( -33.72) >DroSec_CAF1 30198 105 + 1 GGUGGGUGGUGGU-UU--GUAUUUCGGGA-AAUUUUCAAUUUAAAUUUUCCCUCUGUGGCGGCCAUUUUGCAAUGACCGCGACUAUUAUGGCCUCGCAAAAUGGUUCCC .((((((.(((((-..--.......((((-((.(((......))).))))))...((.((((.((((....)))).)))).)).))))).))).)))............ ( -30.00) >DroSim_CAF1 31166 102 + 1 U---GGUGGUGGU-UU--GUAUUUCGGGA-AAUUUUCAAUUUAAAUUUUCCCUCUGUGGCGGCCAUUUUGCAAUGGCCGCGACUAUUAUGGCCUCGCAAAAUGGUUCCC .---.((((.(((-(.--(((....((((-((.(((......))).))))))...((.(((((((((....))))))))).)))))...))))))))............ ( -33.60) >DroEre_CAF1 30587 95 + 1 ------UGCGAGU--------UUUCGGGAAAAUUUUCAAUUUAAAUUUCCCCUCUGUGGCGGCCAUUUUGCAAUGGCCGCGACCAUUAUGGCCUCGCAAAAUGGUUACC ------((((((.--------....(((.((((((.......)))))).)))...((.(((((((((....))))))))).)).........))))))........... ( -34.00) >DroYak_CAF1 30914 97 + 1 U---GGUGGGAGU--------UUUCGGGA-AAUUUUCAAUUUAAAUUUUCCCUCUGCGGCGGCCAUUUUGCAAUGGCCGCGACUAUUAUGGCCUCGCAAAAUGGUUCCC .---...((((((--------....((((-(((((.......)))))))))....))....((((((((((...(((((..(...)..)))))..)))))))))))))) ( -33.80) >consensus U___GGUGGGAGU_UU__GUAUUUCGGGA_AAUUUUCAAUUUAAAUUUUCCCUCUGUGGCGGCCAUUUUGCAAUGGCCGCGACUAUUAUGGCCUCGCAAAAUGGUUCCC .........................((((.(((((.......))))).)))).....((..((((((((((...(((((..(...)..)))))..))))))))))..)) (-26.01 = -27.07 + 1.06)
| Location | 12,508,741 – 12,508,843 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.83 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -26.15 |
| Energy contribution | -26.90 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -4.26 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.966831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12508741 102 - 27905053 GGGAACCAUUUUGCGAGGCCAUAAUAGUCGCGGCCAUUGCAAAAUGGCCGCCACAAAGGGAAAAUUUAAAUUGAAAAUU-UCCGGAAAUAC--AA-CCCACCACC---A (((..(((((((((((((((...........)))).)))))))))))...........(((((.(((......))).))-)))........--..-)))......---. ( -31.30) >DroPse_CAF1 31050 102 - 1 ---GACCAUUUUGCGAGGCCAUAACAGUCGCGGCCAUUGCAAAAUGGCUGCCACAGAGGGAAAAUUUAAAUUGAAAUUU-CCCAGAACUCCCCAGAACUCCUGCC---A ---..(((((((((((((((...........)))).)))))))))))..........((((((.(((.....))).)))-))).........(((.....)))..---. ( -30.40) >DroSec_CAF1 30198 105 - 1 GGGAACCAUUUUGCGAGGCCAUAAUAGUCGCGGUCAUUGCAAAAUGGCCGCCACAGAGGGAAAAUUUAAAUUGAAAAUU-UCCCGAAAUAC--AA-ACCACCACCCACC (((..(((((((((((((((...........)))).)))))))))))..........((((((.(((......))).))-)))).......--..-.......)))... ( -32.10) >DroSim_CAF1 31166 102 - 1 GGGAACCAUUUUGCGAGGCCAUAAUAGUCGCGGCCAUUGCAAAAUGGCCGCCACAGAGGGAAAAUUUAAAUUGAAAAUU-UCCCGAAAUAC--AA-ACCACCACC---A .((..(((((((((((((((...........)))).)))))))))))...)).....((((((.(((......))).))-)))).......--..-.........---. ( -32.40) >DroEre_CAF1 30587 95 - 1 GGUAACCAUUUUGCGAGGCCAUAAUGGUCGCGGCCAUUGCAAAAUGGCCGCCACAGAGGGGAAAUUUAAAUUGAAAAUUUUCCCGAAA--------ACUCGCA------ ...........((((((.........((.(((((((((....))))))))).))...((((((((((.......))))))))))....--------.))))))------ ( -38.40) >DroYak_CAF1 30914 97 - 1 GGGAACCAUUUUGCGAGGCCAUAAUAGUCGCGGCCAUUGCAAAAUGGCCGCCGCAGAGGGAAAAUUUAAAUUGAAAAUU-UCCCGAAA--------ACUCCCACC---A ((((.....((((((.(((.......)))(((((((((....)))))))))))))))((((((.(((......))).))-))))....--------..))))...---. ( -39.40) >consensus GGGAACCAUUUUGCGAGGCCAUAAUAGUCGCGGCCAUUGCAAAAUGGCCGCCACAGAGGGAAAAUUUAAAUUGAAAAUU_UCCCGAAAUAC__AA_ACCACCACC___A ((...(((((((((((((((...........)))).)))))))))))...)).....((((.(((((.......))))).))))......................... (-26.15 = -26.90 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:33 2006