Locus 4772

Sequence ID 3R_DroMel_CAF1
Location 12,504,190 – 12,504,284
Length 94
Max. P 0.778265
window7824

overview

Window 4

Location 12,504,190 – 12,504,284
Length 94
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 83.36
Mean single sequence MFE -22.35
Consensus MFE -14.05
Energy contribution -14.30
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.63
SVM decision value 0.55
SVM RNA-class probability 0.778265
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12504190 94 - 27905053
ACGGACAGAGGUCAAUUCCUUUAAAAUCGCACCAUGAUUGAUGGGUG----UCUGUCUAGGCAAAAUAUAU-ACAUAUCUAUAUAUAUGUAGAUGUUUC
..(((((((((......))........(((.((((.....)))))))----))))))).....((((((.(-((((((......))))))).)))))). ( -23.40)
>DroSec_CAF1 25669 92 - 1
ACGGACAGAGGUCAAUUCCUUUAAAAUCGCUCCAUGAUUGAUGGGUG----UCUGUCUAGGCAAAAUAUAU---AUAUCUAUAUAUAUGUAGAUGUUUC
..(((((((((......))........(((.((((.....)))))))----)))))))(((((...(((((---((((....)))))))))..))))). ( -23.10)
>DroSim_CAF1 25023 84 - 1
ACGGACAGAGGUCAAUUCCUUUAAAAUCGCUCCAUGAUUGAUGGGUG----UCUGUCUAGGCAAAAUAUAU-----------AUAUAUGUAGAUGUUUC
..(((((((((......))........(((.((((.....)))))))----)))))))(((((...(((((-----------....)))))..))))). ( -18.80)
>DroEre_CAF1 26043 80 - 1
--GGACAGAGGUCAAUUCCUUUAAAAUCGCCCAAUGAUUGAUGGGUGAUGGUCUGUCUAGGCAUAGUAUAUC-------------UAU----AUGUUUC
--(((((((((......))......((((((((........))))))))..)))))))(((((((.......-------------..)----)))))). ( -24.10)
>consensus
ACGGACAGAGGUCAAUUCCUUUAAAAUCGCUCCAUGAUUGAUGGGUG____UCUGUCUAGGCAAAAUAUAU___________AUAUAUGUAGAUGUUUC
..(((((((((......))........(((.((((.....)))))))....)))))))......................................... (-14.05 = -14.30 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:27 2006