Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,502,151 – 12,502,242 |
Length | 91 |
Max. P | 0.532640 |
Location | 12,502,151 – 12,502,242 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -22.27 |
Energy contribution | -21.95 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.61 |
Structure conservation index | 0.70 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12502151 91 + 27905053 CCAUGGCAAUGGACGUGGACGUG------GACGU------------GAACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAAA (((((........))))).((((------.(((.------------...)))...))))..((.(((.(.(((((......)))))).))).))............... ( -29.10) >DroSec_CAF1 23624 91 + 1 CCAUGGCAAUGGACGUGGACGUG------GACGU------------GAACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAAA (((((........))))).((((------.(((.------------...)))...))))..((.(((.(.(((((......)))))).))).))............... ( -29.10) >DroSim_CAF1 22987 85 + 1 CCAUGGCAAUGGACGU------G------GACGU------------GAACGUGGACAUGGACAGGCGGCACAGGGACAAGCUCCUGGGCGCGUGAAAAAAGGAACGAAA (((((...(((.(((.------.------..)))------------...)))...))))).((.(((.(.(((((......)))))).))).))............... ( -26.80) >DroEre_CAF1 24012 109 + 1 CCAUGGCCAUGGACGUGGAAGUGGACGUGGACGUGGACAUGGACAUGGACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAGGGAACGAAA (((((.(((((..((((...(((..((......))..)))...))))..))))).))))).((.(((.(.(((((......)))))).))).)).....(....).... ( -43.40) >DroYak_CAF1 23990 97 + 1 CCAUGGCCAUGGACGUGGACGUAGUUGUGGAUGU------------GGAUGUCGACAUGGACAAGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAGA .(((((((..(((((((..(....(((((..(((------------...((((......)))).))).))))))..)))).)))..))).))))............... ( -29.70) >consensus CCAUGGCAAUGGACGUGGACGUG______GACGU____________GAACGUGGACAUGGACAGGCGGCACAGGGACACGCUCCUGGGCGCGUGAAAAAAGGAACGAAA (((((...(((.((((..............))))...............)))...))))).((.(((.(.(((((......)))))).))).))............... (-22.27 = -21.95 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:25 2006