| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,484,838 – 12,484,950 |
| Length | 112 |
| Max. P | 0.574418 |
| Location | 12,484,838 – 12,484,950 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 85.21 |
| Mean single sequence MFE | -27.13 |
| Consensus MFE | -15.35 |
| Energy contribution | -17.13 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12484838 112 - 27905053 AACACAUAUCUGCAUU----UUGUAGCUGCUGUUAUGAGACACAUAUUUUUGAUUGCAAAAUGAAAUGUAUGUAUUUCGUCGAUGCAGGUCCAAAAUGAAUAAUAUUAAAAGUUUA ............((((----(((.(.((((....((((((.((((((.(((.(((....))).))).)))))).))))))....)))).).))))))).................. ( -26.30) >DroSec_CAF1 6343 106 - 1 AACACACAUCUGCAUUUGUUUUGGAGCUGCUGUUAUAAGACAGAUAUAUUUGACUGCAA----------AUGUAUUUGGUCGAUGCAGAUCCAAAAUGAAUAAUAUUAAAAGUAUA .............(((..(((((((.((((........((((((((((((((....)))----------)))))))).)))...)))).)))))))..)))............... ( -29.00) >DroSim_CAF1 5155 106 - 1 AACACACAUCUGCAUUUGUUUUGGAGCAGCUGUUAUAAGACAGAUACUUUUGAUUGCAA----------AUGUAUUUCGUCGAUGCAGAUCCAAAAUGAAUAAUAUUAAAAGUAUA .............(((..(((((((....((((.....(((((((((.((((....)))----------).)))))).)))...)))).)))))))..)))............... ( -26.10) >consensus AACACACAUCUGCAUUUGUUUUGGAGCUGCUGUUAUAAGACAGAUAUUUUUGAUUGCAA__________AUGUAUUUCGUCGAUGCAGAUCCAAAAUGAAUAAUAUUAAAAGUAUA .............((((((((((((.((((((((....)))).......(((((((((............))))....))))).)))).))))))))))))............... (-15.35 = -17.13 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:10 2006