Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,484,423 – 12,484,519 |
Length | 96 |
Max. P | 0.789521 |
Location | 12,484,423 – 12,484,519 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.97 |
Mean single sequence MFE | -21.22 |
Consensus MFE | -14.80 |
Energy contribution | -16.24 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.70 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12484423 96 + 27905053 UCUGUC------UCCGCGUCAUUUCGCCCAAUCCCACAUACACCCUACGGAUCUAAGGAUCUAAGGAUCUAAGGAUCUACUGAUCUAAGUGUCCACCUUGGA ......------((((((......))).....................((((....(((((...(((((....)))))...)))))....)))).....))) ( -21.00) >DroSec_CAF1 5928 96 + 1 UCUGUC------UCCGCGUCAGUACGCCCAAUCCCACAUACACCCUACGGAUCUAAGGAUCUACGGAUCUAAGGAUCUACUGAUCUAAGUGUCCUCCUUGGA (((((.------...((((....)))).....................(((((....))))))))))((((((((..((((......))))...)))))))) ( -23.20) >DroSim_CAF1 4741 96 + 1 UCUGUC------UCCGCGUCAGUACGCCCAAUCCCACAUACACCCUACGGAUCUAAGGAUCUACGGAUCUAAGGAUCUACUGAUCUAAGUGUCCUCCUUGGA (((((.------...((((....)))).....................(((((....))))))))))((((((((..((((......))))...)))))))) ( -23.20) >DroEre_CAF1 6104 90 + 1 UCUGUCUCCGUCUCCGCGUCCUUCCGCCCAAUCCCACAUACACCCC----A--------UCAGUUGAUCCAAGGAUCUACUGAUCUAAGUGUCCUCCCUGGA ............((((((......)))............((((...----(--------(((((.((((....)))).))))))....)))).......))) ( -19.80) >DroYak_CAF1 5971 78 + 1 UCUGUC------UCCGCGCCAUUCCGCCCAAUCCC---UACA---G----A--------UCUAAGGAUCUAAGGAUCUACUGAUCCAAGUGUCCUCCUUGGA (((((.------...(((......)))........---.)))---)----)--------((((((((.(...(((((....)))))....)...)))))))) ( -18.92) >consensus UCUGUC______UCCGCGUCAUUACGCCCAAUCCCACAUACACCCUACGGAUCUAAGGAUCUAAGGAUCUAAGGAUCUACUGAUCUAAGUGUCCUCCUUGGA ............((((((......))).....................(((((....)))))..)))((((((((..((((......))))...)))))))) (-14.80 = -16.24 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:09 2006