Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,483,488 – 12,483,582 |
Length | 94 |
Max. P | 0.777557 |
Location | 12,483,488 – 12,483,582 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 81.64 |
Mean single sequence MFE | -13.30 |
Consensus MFE | -11.55 |
Energy contribution | -11.88 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.87 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12483488 94 - 27905053 GAAGAGGAGUGC---GACAAACCGUUUGCCCCGGCAAACGCAAAUAAAUUAUUGGUUUUGAAAAAAUCUAAAGAAAACAAAAAAAAAAAACAAUGAG .........(((---(......)((((((....))))))))).........((((.(((....))).)))).......................... ( -13.00) >DroPse_CAF1 6795 81 - 1 GAA--GGAGGACGACGACAAAUCGUUUGCCCUGGCAAACGAAAAUAAAUUAUUGGUUUUGAAAAAAUCUAU--------------AAAAACAAAGAG ...--(..(.....)..)...((((((((....)))))))).......((((.(((((.....))))).))--------------)).......... ( -14.80) >DroEre_CAF1 5176 84 - 1 GUAGAGGAGUAC---GACAAACCGUUUGCCCCGGCAAACGCAAAUAAAUUAUUGGUUUUGAAAAAAUCUAAAGAA----------AAAAACAAUGAG ............---.......(((((((....)))))))........((((((.((((................----------)))).)))))). ( -12.89) >DroYak_CAF1 5042 84 - 1 AUAGAGGAGUAC---GACAAACCGUUUGCCCCGGCAAACGCAAAUAAAUUAUUGGUUUUGAAAAAAUCUAAAGAA----------AAAAACAAUGAG .((((......(---((..((((((((((....))))))...((((...)))))))))))......)))).....----------............ ( -12.90) >DroAna_CAF1 4740 90 - 1 GAAAAGAAGGAC---GACAAAUCGUUUGCUCCGGCAAACGCAAAUAAAUUAUUGGUUUUGAAAAAAUCUAAAAAAAGAAACAA--AAACAUAAC--G ............---.......(((((((....)))))))...........((((.(((....))).))))............--.........--. ( -11.30) >DroPer_CAF1 6742 77 - 1 GAA--GGAGGAC---GACAAAUCGUUUGCCCUGGCAAACGAAAAUAAAUUAUUGGUUUUGAAAAAAUCUA---------------AAAAACAAAGAG ...--.......---......((((((((....))))))))..........((((.(((....))).)))---------------)........... ( -14.90) >consensus GAAGAGGAGGAC___GACAAACCGUUUGCCCCGGCAAACGCAAAUAAAUUAUUGGUUUUGAAAAAAUCUAAAGAA__________AAAAACAAUGAG ......................(((((((....)))))))...........((((.(((....))).)))).......................... (-11.55 = -11.88 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:08 2006