Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,483,315 – 12,483,411 |
Length | 96 |
Max. P | 0.552285 |
Location | 12,483,315 – 12,483,411 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.42 |
Mean single sequence MFE | -19.08 |
Consensus MFE | -13.04 |
Energy contribution | -13.37 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.28 |
Mean z-score | -1.19 |
Structure conservation index | 0.68 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12483315 96 + 27905053 GAGCGUACAACUCACGAUCAAUUAACGGCUCAAAACGAGAUCAAAAGCAAUUUCGCAUGCAAGCGGGU----------AGCCCGCGAAG---ACUCUCUCAAACAACUC ((((.......................)))).....((((((....(((........)))..(((((.----------..)))))...)---).))))........... ( -19.90) >DroSec_CAF1 4820 96 + 1 GAGCGUUCAACUCACGAUCAAUUAACGGAUCGAAACGAGAUCAAAAGCAAUUUCGCAUGCAAGCGGGC----------AGUCCGCGAAC---UCUUUCUCAAACAACUC (((...........(((((........)))))....(((.((....(((........)))..((((..----------...)))))).)---))...)))......... ( -21.20) >DroSim_CAF1 3640 96 + 1 GAGCGUACAACUCACGAUCAAUUAACGGAUCGAAACGAGAUCAAAAGCAAUUUCGCAUGCAAGCGGGC----------AGCCCGCGAAC---UCUUUCUCAAACAACUC (((...........(((((........)))))....(((.((....(((........)))..(((((.----------..))))))).)---))...)))......... ( -23.20) >DroYak_CAF1 4871 89 + 1 GAGCGUACAACUCACGAUCAAUUAACGG-----AACGAGAUCAAAAGCAAUUUCGCAUGCAAGCGGGC----------AGCCCGCGAA-----CUCUCUCAAACAACUG ((.(((.......))).))........(-----(..(((.((....(((........)))..(((((.----------..))))))).-----)))..))......... ( -18.10) >DroAna_CAF1 4568 88 + 1 GAUCGUACAACUUACGAUCAAUCAACGG----AAACGAGAUCAAAAGCAAUUUCGCAUGCAUUCUC--------------UCUAAAAAC---AAACUCGCAAACAACUC (((((((.....))))))).......(.----...)((((......((......))......))))--------------.........---................. ( -15.10) >DroPer_CAF1 6506 104 + 1 UAGCAUACAACUUACGAUCAAUUAACGG-----AACGAGAUCAAAAGCAAUUUCGCAUGCGAGCGGGAAAACAAAGCGAGCUCGCGAACUACUAUUUCUCAAAUAUUCU ............................-----...((((......((......)).(((((((...............)))))))..........))))......... ( -16.96) >consensus GAGCGUACAACUCACGAUCAAUUAACGG____AAACGAGAUCAAAAGCAAUUUCGCAUGCAAGCGGGC__________AGCCCGCGAAC___UCUCUCUCAAACAACUC ..((((.........((((......((........)).))))....((......))))))..((((((...........))))))........................ (-13.04 = -13.37 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:07 2006