Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,481,683 – 12,481,775 |
Length | 92 |
Max. P | 0.576336 |
Location | 12,481,683 – 12,481,775 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 73.21 |
Mean single sequence MFE | -14.80 |
Consensus MFE | -5.26 |
Energy contribution | -6.08 |
Covariance contribution | 0.82 |
Combinations/Pair | 1.31 |
Mean z-score | -1.73 |
Structure conservation index | 0.36 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12481683 92 - 27905053 AAAAAUAAAAGAAAUUGAU-UUUUC-AAUUAAUUUCCUUAAAUUCUUUCAAAAGAAUUUAGCUAAACGCCCACUUUUAGCGCGGACUCAAACCA ..........(((((((((-(....-))))))))))..(((((((((....)))))))))((((((........))))))..((.......)). ( -17.30) >DroSec_CAF1 3187 93 - 1 AAAAAUAUAAGAAAUUGAU-UUUCCUAGUUAGUUUCCUUAAAAUCUUUCAAAAGAAUUAGGCGAAACCCCUAUUUCUAACAUGGACUCAAGCCA .......((((((((((((-(.....))))))))).))))............((((.((((.(....))))).))))....(((.(....)))) ( -14.50) >DroSim_CAF1 2007 93 - 1 AAAAAUACAAGAAAUUGAU-UUUCCUAGUUAGUUUCCUUAAAAUCUUUCAAAAGAAUUAGGCGAAACCCCUAUUUCUAGCACGGACUCAAACCA ..........(((((((((-(.....))))))))))................((((.((((.(....))))).)))).....((.......)). ( -14.00) >DroEre_CAF1 3317 94 - 1 AUAAAGUAAGGAAACUGACUUUUUCUAGUUAACCUCUUUAAAAUCUUGUAAAAGAUUUAUGCGAAACGCCUGGAGCUAGCACGGACUCGAACCA ..(((((.((....)).)))))..((((((..((......(((((((....)))))))..(((...)))..))))))))...((.......)). ( -17.80) >DroYak_CAF1 3181 77 - 1 ------------UAUUGUCGUUUUCUCGUUAAC-----UAAAAUCUUUUAAAAGGUUUUGGCGAAACACUUACUUCUAGCACAGACUCAAACCA ------------....((((......)((((.(-----(((((((((....)))))))))).(((........)))))))...)))........ ( -10.40) >consensus AAAAAUAAAAGAAAUUGAU_UUUUCUAGUUAAUUUCCUUAAAAUCUUUCAAAAGAAUUAGGCGAAACCCCUACUUCUAGCACGGACUCAAACCA ..........(((((((((........)))))))))....(((((((....))))))).................................... ( -5.26 = -6.08 + 0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:06 2006