Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,476,152 – 12,476,272 |
Length | 120 |
Max. P | 0.860563 |
Location | 12,476,152 – 12,476,272 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.33 |
Mean single sequence MFE | -41.32 |
Consensus MFE | -22.10 |
Energy contribution | -21.72 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.42 |
Mean z-score | -1.85 |
Structure conservation index | 0.53 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12476152 120 - 27905053 ACCGCUCUCGAAGCUUACGCACCCACGGUCACUGGUGGCCAUCUGGUGCACCAAUUCGACGCUGCAUCAGUUGGCCCUGGAGCAGCAGCUGCUGCCCAGUUGGAAUCUCCGGUUGCUCCA ...(((.....)))............(((.(((((.(((((.((((((((.(........).)))))))).)))))((((.(((((....))))))))).........))))).)))... ( -46.00) >DroVir_CAF1 6687 120 - 1 GCCGCUUGGACAACUCACGCAUGAACGCACCUUAGUUGCCAUUUGGUGCACGAACUCAAACCUGCAUCAACAGGCGCUGGAAACACAGCUUCUGCCACGUUGGCAACUACGUUUGCUACA ((.((.(((.....))).))..(((((.....(((((((((.((((((((.(........).))))))))((((.((((......)))).))))......)))))))))))))))).... ( -37.60) >DroPse_CAF1 6204 120 - 1 GCCGCUUUCCAAGCUGACCAAUACACGUACCCUUGUGGCCAUUUGGUGCACGAAUUCAAUCCAGCACCAGACGGCUUUGGAAACACAAAUUUUGCCUAGCUGGAAUCUACGCCUACUCCA ((....(((((.((((..(((..((((......))))(((.((((((((..((......))..)))))))).)))..((....))......)))..))))))))).....))........ ( -33.70) >DroGri_CAF1 5949 120 - 1 GCCGCUCAGCGAGCUCACACACAGGCACACCUUGGUGGCCGUUUGGUGCACGAACUCCACGCUGCAUCAGCAGGCCCUGGAAAUGCAGCUGCUGCCUCGCUGGCGACUGCGAUUGCUGCA ((.((.((((.((((((....((((..(((....)))(((..((((((((((.......)).))))))))..)))))))....)).))))))))..((((.(....).))))..)).)). ( -45.80) >DroSec_CAF1 25301 120 - 1 ACCGCUCUCCCAGCUCACGCACUCACGGUCACUGGUGGCCAUCUGGUGCACCAAUUCGACGCUGCAUCAGUUGGCCCUGGAGCAGCAGCUCUUGCCCAGAUGGAAUCUGCGCUUGCUCCA .........((((....((......))....)))).(((((.((((((((.(........).)))))))).)))))..((((((((.((....)).(((((...))))).)).)))))). ( -43.80) >DroYak_CAF1 24522 120 - 1 ACCGCUCUCAGAACUCACGCACCCACGAUCACUGGUGGCCAUCUGGUGCACCAACUCGACGCUGCAUCAGUUGGCUCUGGAGCAACAGCUAUUGCCCAGCUGGAAACUGCGAUUGCUUCA ...((((.((((.......((((..........))))((((.((((((((.(........).)))))))).))))))))))))...(((.(((((......(....).))))).)))... ( -41.00) >consensus ACCGCUCUCCAAGCUCACGCACACACGCACACUGGUGGCCAUCUGGUGCACCAACUCGACGCUGCAUCAGUUGGCCCUGGAAAAACAGCUGCUGCCCAGCUGGAAACUGCGAUUGCUCCA ...((..........................((((.((((..((((((((.(........).))))))))..)))))))).....(((((.......)))))............)).... (-22.10 = -21.72 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:05 2006