Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,459,747 – 12,459,863 |
Length | 116 |
Max. P | 0.972114 |
Location | 12,459,747 – 12,459,863 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 81.53 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -24.86 |
Energy contribution | -26.87 |
Covariance contribution | 2.01 |
Combinations/Pair | 1.09 |
Mean z-score | -2.56 |
Structure conservation index | 0.74 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12459747 116 + 27905053 ACCCUCCUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCGAAACUGUGAGGCAAAGUGCGCCGAACAGUUUUGAGUCCGCACUGUAGAACGGCUAUAUCA--UUCGACCGCUCGAAU .........((((.(.....(....)..((((((((.(((((((((((..(((.......)))..)))))))))))..)))))))).....).))))...(--(((((....)))))) ( -38.50) >DroSim_CAF1 7914 118 + 1 UCCUUCCUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCGAAACUGUGAGGCAAUAUGCGUCGAACAGUUUUGAGUCCGCACUGUAAAACGGCUAUAUCAUAUUCGACCGCUCGAAU .........((((.(.....(....)..((((((((.(((((((((((((.((.....)).))..)))))))))))..)))))))).....).)))).....((((((....)))))) ( -35.80) >DroEre_CAF1 7864 109 + 1 UCCUCUUUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCG----UGUGCAGCAUU--UAAUCAUAUUGCUGUGAAA-CGGACUGUAAAACGGCUAUAUCA--UUCGACCGCUCGAAU .........((((.(.....(....)..(((((.((((((.----...((((((..--.........))))))))))-)).))))).....).))))...(--(((((....)))))) ( -27.10) >consensus UCCUUCCUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCGAAACUGUGAGGCAAU_UGCGUCGAACAGUUUUGAGUCCGCACUGUAAAACGGCUAUAUCA__UUCGACCGCUCGAAU .........((((.(.....(....)..((((((((.(((((((((((..(((.......)))..)))))))))))..)))))))).....).))))......(((((....))))). (-24.86 = -26.87 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:03 2006