Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,457,519 – 12,457,630 |
Length | 111 |
Max. P | 0.836930 |
Location | 12,457,519 – 12,457,630 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 73.17 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -15.22 |
Energy contribution | -16.08 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.55 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.836930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12457519 111 + 27905053 UCUACCCUCUGAUUACUCUUUGCAGCCACUGAGGCGUACACCCAGAAACGACUGCCGAAUACCGUGUCAUCGGACAUGGCCGGCAAUCCACCGCUGUACAUCACAAAGAAC ................((((((..(((.....)))(((((.........((.(((((....(((((((....))))))).))))).))......)))))....)))))).. ( -31.46) >DroVir_CAF1 5520 98 + 1 UCCCA-------------CGCUCAGCCACCGCGGCGUUCAGCAAAGAUCAACUGGAAAAGACCGUGUCAUCGGACAUGAACGGCAAUCCUCCGCUGUACAUCACAAAGAGC .....-------------.((((.(((.....)))((.((((..((.....))(((......((((((....))))))...((....))))))))).))........)))) ( -25.80) >DroGri_CAF1 6160 98 + 1 UCAAU-------------CGUUUAGCGACCGCUGCGUUCAGCAAAGACCAACUGGAAAAGGCCGUGUCAUCGGACAUGGAUGGCAAUCCGCCGCUGUACAUCACAAAGAAU .....-------------.((.((((..((((((....)))).....((....))....))(((((((....)))))))..(((.....))))))).))............ ( -27.30) >DroMoj_CAF1 5844 98 + 1 UCCCA-------------CGUUUAGCCACGGCGGCGUUCAGUAAAGAUCAACUGGAAAAGACCGUGUCAUCGGACAUGGAAGGGAAUCCGCCGCUCUACAUAACAAAGAGC ((((.-------------......(((.....))).((((((........)))))).....(((((((....)))))))..)))).......(((((.........))))) ( -29.90) >DroAna_CAF1 5234 102 + 1 UCAACU--UCA-------AUUCCAGCAACUGCGGCGUACAGCCAACAGAAUCUGCCCAACACCAUUUCAUCGGACAUGGACGGCAAUCCGCCACUCUACAUCACAAAGAAC .....(--((.-------......((....))((((....(((..(((...))).......((((.((....)).))))..)))....))))...............))). ( -19.10) >DroSim_CAF1 5746 111 + 1 UCCACCCUCUGAUAACUCUUUGCAGCCACUGAGGCGUACACCCAGAAACGACUGCCGAAUACCGUGUCAUCGGACAUGGCCGGCAAUCCACCGCUGUACAUCACAAAGAAC ................((((((..(((.....)))(((((.........((.(((((....(((((((....))))))).))))).))......)))))....)))))).. ( -31.46) >consensus UCCAC_____________CGUUCAGCCACUGCGGCGUACAGCAAAGAACAACUGCAAAAGACCGUGUCAUCGGACAUGGACGGCAAUCCGCCGCUGUACAUCACAAAGAAC ........................(((.....)))((.((((...................(((((((....)))))))..((.......)))))).))............ (-15.22 = -16.08 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:02 2006