Locus 4750

Sequence ID 3R_DroMel_CAF1
Location 12,457,040 – 12,457,134
Length 94
Max. P 0.779945
window7797

overview

Window 7

Location 12,457,040 – 12,457,134
Length 94
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 89.88
Mean single sequence MFE -27.45
Consensus MFE -19.88
Energy contribution -21.25
Covariance contribution 1.38
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.72
SVM decision value 0.55
SVM RNA-class probability 0.779945
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12457040 94 - 27905053
UAAAAUGAGGAACAACUUUAUGCAUGUCCUGGUGGUGAUGCCAGGGCGGCGUA---CUAGAA-AAAAAAGGUUUAUUGAACCAAUUACGUAAGCCUCU
......((((.((..((.(((((.(((((((((......))))))))))))))---..))..-......(((((...)))))......))...)))). ( -30.40)
>DroAna_CAF1 4726 97 - 1
UAAAAUGAGGAACAACUUUAUGCAUGUCCUGGUUGGGAUGCCUGCCCUGGGUGGGCAUGGAGCAA-AAAGGUUUAUUGAACCAAUUACGUAAGUCUCG
......((((.((.......(((..(((((....))))).(((((((.....))))).)).))).-...(((((...)))))......))...)))). ( -27.20)
>DroSim_CAF1 5267 93 - 1
UAAAAUGAGGAACAACUUUAUGCAUGUCCUGGUGGGGAUGGCAGGGCGGCGUA---CUAGAA-AA-AAAGGUUUAUUGAACCAAUUACGUAAGCCUCG
......((((.((..((.(((((.(((((((.(......).))))))))))))---..))..-..-...(((((...)))))......))...)))). ( -26.10)
>DroEre_CAF1 5230 93 - 1
UAAAAUGAGGAACAACUUUAUGCAUGUCCUGGUGGGGAUGGCAGGGCGGCGUA---CUAGAA-AA-AAAGGUUUAUUGAACCAAUUACGUAAGCCUCG
......((((.((..((.(((((.(((((((.(......).))))))))))))---..))..-..-...(((((...)))))......))...)))). ( -26.10)
>consensus
UAAAAUGAGGAACAACUUUAUGCAUGUCCUGGUGGGGAUGCCAGGGCGGCGUA___CUAGAA_AA_AAAGGUUUAUUGAACCAAUUACGUAAGCCUCG
......((((.((.....(((((.(((((((((......))))))))))))))................(((((...)))))......))...)))). (-19.88 = -21.25 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:01 2006