Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,768,077 – 1,768,187 |
Length | 110 |
Max. P | 0.918864 |
Location | 1,768,077 – 1,768,187 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 81.34 |
Mean single sequence MFE | -34.43 |
Consensus MFE | -22.39 |
Energy contribution | -24.08 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.17 |
Mean z-score | -2.24 |
Structure conservation index | 0.65 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1768077 110 - 27905053 AGUGCAUGAAAGAAAGUAGUCAGCCCCAUCAAAGGCUGG-GGUACAAGCAUGGCU-AAAAAUUCCGGCUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUAAGGCACUGA (((((..........((((((.((((((........)))-)))...(((...)))-.........))))))...(((((((((.(((.....)))))))))))).))))).. ( -39.20) >DroSec_CAF1 77334 112 - 1 AAUGCAUGAAUGGAAGUAGUCAGCCCCAUCAAAGGCUGGCGGUACAAGGUUGGAUGAAAAAUUCCACGUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUCAGGCACUGA ..(((.((((((......(((((((........)))))))(((((.....((((........)))).)))))))))(((((((.(((.....)))))))))))).))).... ( -37.10) >DroSim_CAF1 79726 112 - 1 AAUGCAUGAAUGGAAGUAGUCAGCCCCAUCAAAGGCUGGCGGUACAAGGUUGGAUGAAAAAUUCCACCUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUCAGGCACUGA ..(((.(((((((..((((((((((........)))))))..))).((((.(((........)))))))..)))))(((((((.(((.....)))))))))))).))).... ( -39.30) >DroYak_CAF1 76624 93 - 1 AAUAUAUGAAAAGAAGUAGUCAGCCAUAUCAAAGGCU-------------------AAAAAUUCCCGCAGUCCGUUGCUGAGAUGCCGUAAAGGUUUUCGGUGAGGCAUUGA ............(((......((((........))))-------------------.....)))...((((((.(..((((((.(((.....)))))))))..))).)))). ( -22.10) >consensus AAUGCAUGAAAGGAAGUAGUCAGCCCCAUCAAAGGCUGG_GGUACAAGGUUGGAU_AAAAAUUCCACCUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUCAGGCACUGA (((((.............(((((((........)))))))..................................(((((((((.(((.....)))))))))))).))))).. (-22.39 = -24.08 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:05 2006