Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,456,021 – 12,456,160 |
Length | 139 |
Max. P | 0.949049 |
Location | 12,456,021 – 12,456,121 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -34.25 |
Consensus MFE | -23.54 |
Energy contribution | -24.35 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.05 |
Mean z-score | -2.10 |
Structure conservation index | 0.69 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12456021 100 - 27905053 CUGGCCA-AGAGAGUGCCCUGCUGUUAAGUGGGGUCCUGGGGAAUGGCUGUGGCAUAUGUCACAGUGUCACAGGUUGAUAUGGGAUA----------CGUUCAGGUAUAAU ...(((.-....((..(((..((....))..)))..))...(((((((((((((....))))))))(((.((........)).))).----------))))).)))..... ( -35.40) >DroAna_CAF1 3724 103 - 1 CUGGCAGGAUACAGUGCCCUGCUGCUAAGUGGGGUAUUAGGGACUGGAAGUGGCAUAUGUCA--------AUGGAUGAUGUAGGAUAGGACAUUCGGCAUUCAGGUACAAA (((.(((..(..(((((((..((....))..)))))))..)..)))..((((.(.(((((((--------.....)))))))((((.....))))).)))))))....... ( -29.40) >DroSim_CAF1 4258 100 - 1 CUGGCCA-GGAGAGUGCCCUGCUGUUAAGUGGGGUCCUAGGGACUGGCUGUGGCAUAUGUCACAGUGUCACAGGUUGAUAUGGGAUA----------CGUUCAGGUAUAAU (((((((-(...((..(((..((....))..)))..)).....)))))((((((....))))))(((((.((........)).))))----------)...)))....... ( -38.20) >DroEre_CAF1 4200 100 - 1 CUGGCCA-AGAGAGUGCCCUGCUGUUAAGUGGGGUCCUAGGGACUGGCUGUGGCAUAUGUCACAGUGUCACAGGUUGAUAUAGGAUA----------CGUUCAGGUAUAAU ..((((.-....((..(((..((....))..)))..))...(((..((((((((....)))))))))))...)))).((((..((..----------...))..))))... ( -34.00) >consensus CUGGCCA_AGAGAGUGCCCUGCUGUUAAGUGGGGUCCUAGGGACUGGCUGUGGCAUAUGUCACAGUGUCACAGGUUGAUAUAGGAUA__________CGUUCAGGUAUAAU ((((........((.((((..((....))..)))).))........((((((((....))))))))..................................))))....... (-23.54 = -24.35 + 0.81)
Location | 12,456,051 – 12,456,160 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.27 |
Mean single sequence MFE | -39.50 |
Consensus MFE | -34.92 |
Energy contribution | -36.30 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.06 |
Mean z-score | -2.06 |
Structure conservation index | 0.88 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12456051 109 - 27905053 U-GCUGGUGUCUAUAUCGCUCUCGAAAUGUUUUCGCUUAUCUGGCCA-AGAGAGUGCCCUGCUGUUAAGUGGGGUCCUGGGGAAUGGCUGUGGCAUAUGUCACAGUGUCAC .-.(..(..........(((((((((.....)))(((.....)))..-.))))))((((..((....))..)))).)..).((...((((((((....)))))))).)).. ( -36.60) >DroAna_CAF1 3764 103 - 1 UGGCCGGCUUCUAUUACGCUCUCGAAAUGUUUUCGCUUAUCUGGCAGGAUACAGUGCCCUGCUGCUAAGUGGGGUAUUAGGGACUGGAAGUGGCAUAUGUCA--------A ..((((.((((((....(.((((.....((.((((((.....))).))).))(((((((..((....))..))))))).)))))))))))))))........--------. ( -34.00) >DroSim_CAF1 4288 109 - 1 U-GCCGGUGUCUAUAUCGCUCUCGAAAUGUUUUCGCUUAUCUGGCCA-GGAGAGUGCCCUGCUGUUAAGUGGGGUCCUAGGGACUGGCUGUGGCAUAUGUCACAGUGUCAC .-((((((.((((....(((((((((.....)))(((.....)))..-.))))))((((..((....))..))))..)))).))))))((((((....))))))....... ( -43.60) >DroEre_CAF1 4230 109 - 1 U-GCCGGUGUCUAUAUCGCUCUCGAAAUGUUUUCGCUUAUCUGGCCA-AGAGAGUGCCCUGCUGUUAAGUGGGGUCCUAGGGACUGGCUGUGGCAUAUGUCACAGUGUCAC .-((((((.((((....(((((((((.....)))(((.....)))..-.))))))((((..((....))..))))..)))).))))))((((((....))))))....... ( -43.80) >consensus U_GCCGGUGUCUAUAUCGCUCUCGAAAUGUUUUCGCUUAUCUGGCCA_AGAGAGUGCCCUGCUGUUAAGUGGGGUCCUAGGGACUGGCUGUGGCAUAUGUCACAGUGUCAC ..((((((.((((....(((((((((.....)))(((.....)))....))))))((((..((....))..))))..)))).))))))((((((....))))))....... (-34.92 = -36.30 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:57 2006