Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,451,735 – 12,451,825 |
Length | 90 |
Max. P | 0.941222 |
Location | 12,451,735 – 12,451,825 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 89.13 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -24.90 |
Energy contribution | -25.57 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.94 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12451735 90 + 27905053 AAACAGCACACACAGCCACACUCACAAACGACGUACACUGCCAGCGCAUAAACAAGUGCUGUUGUGGUUGUUGUUGCUGCUGCUGCUC---GU ...(((((((.((((((((((((......)).)).......((((((........))))))..)))))))))).))))).........---.. ( -28.10) >DroSim_CAF1 3603 93 + 1 AAACAGCACACACAGCCACACACACAAACGACGUACACUGCCAGCGCAUAAACAAGUGCUGUUGUGGUUGUUGUUGCUGCUGCUGCUCCUCCU ...(((((((.(((((((((............((.....))((((((........)))))).))))))))))).))))).............. ( -27.70) >DroEre_CAF1 3906 85 + 1 GAACAGCACACACAUACACACA--CACUCGACGUACACUGCCAGCGCAUAAACAAGUGCUGUUGUGGUUGUUGUUGCUGCUG---CUC---GU ((.(((((((.(((.(((..((--((......((.....))((((((........)))))).))))..)))))))).)))))---.))---.. ( -24.00) >consensus AAACAGCACACACAGCCACACACACAAACGACGUACACUGCCAGCGCAUAAACAAGUGCUGUUGUGGUUGUUGUUGCUGCUGCUGCUC___GU ...(((((((.(((((((((............((.....))((((((........)))))).))))))))))).))))).............. (-24.90 = -25.57 + 0.67)
Location | 12,451,735 – 12,451,825 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 89.13 |
Mean single sequence MFE | -30.77 |
Consensus MFE | -25.17 |
Energy contribution | -25.83 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.82 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12451735 90 - 27905053 AC---GAGCAGCAGCAGCAACAACAACCACAACAGCACUUGUUUAUGCGCUGGCAGUGUACGUCGUUUGUGAGUGUGGCUGUGUGUGCUGUUU ..---(((((((((((((....(((..(((((((((.(........).))))...(....).....)))))..))).)))))...)))))))) ( -29.00) >DroSim_CAF1 3603 93 - 1 AGGAGGAGCAGCAGCAGCAACAACAACCACAACAGCACUUGUUUAUGCGCUGGCAGUGUACGUCGUUUGUGUGUGUGGCUGUGUGUGCUGUUU ............(((((((...(((.(((((...((((.((....(((((.....)))))...))...)))).))))).)))...))))))). ( -29.50) >DroEre_CAF1 3906 85 - 1 AC---GAG---CAGCAGCAACAACAACCACAACAGCACUUGUUUAUGCGCUGGCAGUGUACGUCGAGUG--UGUGUGUAUGUGUGUGCUGUUC ..---(((---(((((.((...(((..((((...(((((((....(((((.....)))))...))))))--).))))..))).)))))))))) ( -33.80) >consensus AC___GAGCAGCAGCAGCAACAACAACCACAACAGCACUUGUUUAUGCGCUGGCAGUGUACGUCGUUUGUGUGUGUGGCUGUGUGUGCUGUUU ............(((((((...(((.(((((...(((..((....(((((.....)))))...))..)))...))))).)))...))))))). (-25.17 = -25.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:54 2006