Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,447,816 – 12,447,931 |
Length | 115 |
Max. P | 0.513863 |
Location | 12,447,816 – 12,447,931 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.03 |
Mean single sequence MFE | -35.51 |
Consensus MFE | -24.62 |
Energy contribution | -25.68 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.36 |
Mean z-score | -1.36 |
Structure conservation index | 0.69 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12447816 115 - 27905053 UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGAGAGUCUCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCUAAGGGGAAAAUUCGUGG ..(((((((...((((.(((....(((((((((.....))))))))).((((((..((...))..))))))))).))))...)))))))...((((.............)))).. ( -37.72) >DroSec_CAF1 12370 115 - 1 UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGAGUUUCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCAAAUGGGAAAAGUCGCGG ..(((((((...((((.(((....(((((((.(.....).))))))).((((((..((...))..))))))))).))))...)))))))...(((((...........))))).. ( -37.10) >DroSim_CAF1 11313 115 - 1 UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGAGUCGCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCAAAGGGGAAAAGUCGUGG ..(((((((...((((.(((....(.(((((.(.....).))))).).((((((..((...))..))))))))).))))...)))))))...(((((...........))))).. ( -33.20) >DroEre_CAF1 24713 115 - 1 UACUUCUGUACAGCUUCACCAGACGGGGCUUUCUUCCCGUGAGUCUCAGGGCUAGAUCAAAGAAAUAGCCAGGUAAAGUAUGAUAGAAGAAGGCGACUAGACGGAAAAGUCGCGG ..(((((((...((((.(((..((((((......)))))).........(((((..((...))..))))).))).))))...)))))))...((((((.........)))))).. ( -39.20) >DroYak_CAF1 22713 115 - 1 CGCUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGACUCUCAGGGCUAUAUCGUAGAAGUAGCCAGGUAGAGUGUGGUAAAAGAAGGCGGCUAGAGGGAAGAGUCGCCG .((........((((((.......))))))((((((((...((((((..((((((.((...)).))))))..).)))))((.((........)).))....))))))))..)).. ( -37.50) >DroAna_CAF1 23161 115 - 1 UUUUCUCGUAAAUCUUGCCCAGACGAGGCUUUCGUCCACUUAUCCGCAGUGCCAGAUCAAUAAAGUAUCCGGGUAAAGUGUGGAGAAGGAAAGCUGCUAUGGAAAAAAGCCAAGG .....((((.............))))((((((..(((((((.((((((.((((.((((......).)))..))))...)))))).)))...........))))..)))))).... ( -28.32) >consensus UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGAGUCUCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCUAAGGGGAAAAGUCGCGG ..(((((((...((((.(((....(((((((.........)))))))..(((((..((...))..))))).))).))))...)))))))...(((((...........))))).. (-24.62 = -25.68 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:52 2006