| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,447,596 – 12,447,705 |
| Length | 109 |
| Max. P | 0.603631 |
| Location | 12,447,596 – 12,447,705 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -38.97 |
| Consensus MFE | -22.50 |
| Energy contribution | -24.36 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12447596 109 - 27905053 ACUGGGAGCUAAGGUGUAGAUGGCGGGCUGGGAUAUAGCAUUUCGUUGGGAUUUGUCUUU---GGAUGUUUGCCAUAUGCUGGCCAGAGCCGCAUUUGCACAGUAGUCCACG ....(((.(((..(((((((((.(((.((((....((((((.....(((.(..((((...---.))))..).))).)))))).))))..))))))))))))..))))))... ( -42.60) >DroSec_CAF1 12150 109 - 1 ACUGGGAGCUAAGGUGUAGAUGGCGGGCUGGGAUCUGGCAUUUCGUUGGGACUUCUCUUU---GGAUGUUUGACAUAUGCUAGCCAGAGCCGCAUUUGCACAGUAGUCCACG ....(((.(((..(((((((((.(((.((((...(((((((...((..((..(((.....---)))..))..))..)))))))))))..))))))))))))..))))))... ( -43.20) >DroSim_CAF1 11093 109 - 1 ACUGGGAGCUAAGGUGUAGAUGGCGGGCUGGGAUCUGGCAUUUCGUUGGGACUUCUCUUU---GGAUGUUUGCCAUAUGCUAGCCAGAGCCGCGUUUGCACAGUAGUCCACG ....(((.(((..(((((((((((.((((((.((.(((((.((((..(((....)))..)---)))....))))).)).))))))...)))..))))))))..))))))... ( -47.50) >DroEre_CAF1 24493 109 - 1 ACUGGGUACUAAGGUGUAGAUGGCGGGCUGGGAUGUGGUAUCUCGUUGUGAUUUCUCUUU---GGAUGUCUGCCAUAUACUGGCCAAAGCCGCAUUCGCACAGUAGUCCACG ....((.((((..(((..((((((.(((..(.((((((((...((((..((....))...---.))))..)))))))).)..)))...)))..)))..)))..))))))... ( -38.60) >DroYak_CAF1 22493 109 - 1 ACUGGGAGCCAAGGUGUAGAUUGGGGGUUGGGAUCUGGUUUCUCGUUUGGAUUUAUCUUU---GGAUGCCUGCCAUAUACUAGCUAAAGCCACAUUCGCACAGUAGUCCACU ....(((.(.(..(((..((((((.((((((.((.((((....((((..((......)).---.))))...)))).)).))))))....))).)))..)))..).))))... ( -27.70) >DroAna_CAF1 22941 109 - 1 GCUGGGAGCAAAGUUGUAUAUUGGAGGCGUAGAGC---CGUUUGGGUGGGUUUUUUUUUUCUGGGCAGUUUCCCGGGCGAGAGCCAGUGCCAUGUUGGCACAGUAGUCCACU .(.((((((................(((.....))---)(((..((..((.....))..))..))).)))))).)(((....))).(((((.....)))))........... ( -34.20) >consensus ACUGGGAGCUAAGGUGUAGAUGGCGGGCUGGGAUCUGGCAUUUCGUUGGGAUUUCUCUUU___GGAUGUUUGCCAUAUGCUAGCCAGAGCCGCAUUUGCACAGUAGUCCACG ....((.((((..((((.((((((.((((((.((.(((((...((((.................))))..))))).)).))))))...)))..))).))))..))))))... (-22.50 = -24.36 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:51 2006