Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,443,519 – 12,443,639 |
Length | 120 |
Max. P | 0.907289 |
Location | 12,443,519 – 12,443,639 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -35.44 |
Consensus MFE | -31.24 |
Energy contribution | -31.16 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.51 |
Structure conservation index | 0.88 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12443519 120 + 27905053 UUUCGCUGAGUUUAGAGCACGAGCUCCUCCCUAAAACGGGAGACCAUUGGGUGUCUUGAAUAUGCUGAACUCGACCUUUGUUGGGUGUAACUUAUAGAUUCCCAAAUAAAUAGAAGCGCU ...((((..(((((((((....))))(((((......)))))....(((((.((((......(((...(((((((....))))))))))......)))).))))).)))))...)))).. ( -36.50) >DroSec_CAF1 8173 120 + 1 UUUCGCUGCGUGUGGAGCACGAGCUCCUCCCUAAAACGGGAGUCCAUUGGGUGUCUUGAAUAUGCUGAACUCGACCUUUGUUGGGUGUAACUUAUAGAUUCCCAAAUAAAUAGAAGCGCU .......((((..(((((....)))))((((......)))).....(((((.((((......(((...(((((((....))))))))))......)))).)))))..........)))). ( -36.00) >DroSim_CAF1 7042 120 + 1 UUUCGCUGCGUUUGGAGCACGAGCUCCUCCCUAAAACGGGAGUCCAUUGGGUGUCUUGAAUAUGCUGAACUCGACCUUUGUUGGGUGUAACUUAUAGAUUCCCAAAUAAAUAGAAGCGCU .......(((((((((((....)))))((((......)))).....(((((.((((......(((...(((((((....))))))))))......)))).)))))........)))))). ( -37.60) >DroEre_CAF1 17869 119 + 1 UGUCGCAGCAGUUGAAGCACGAGCUCCUCCCUA-AACGGGAGUCCAUCGGGUAUCUUGAAUAUACUGAACUCGACCUUUGUUGGGUGUAACUUAUAGAUUCCCAAAUAAAUAGAAGUGCU ...............(((((((....(((((..-...)))))....))(((.((((....((((((.(((.........))).))))))......)))).)))............))))) ( -32.30) >DroYak_CAF1 17944 120 + 1 UUUCGCAGCAGUUGGAGCACGAGCUCCUCCCUAAAACGGGAGUCCAUUGGGUGUCUUGAAUAUGCUGAACUCGACCUUUGUUGGGUGUAACUUAUAGAUUCCCAAAUAAAUAGAAGCGCU ....((.((....(((((....)))))((((......)))).....(((((.((((......(((...(((((((....))))))))))......)))).)))))..........)))). ( -34.80) >consensus UUUCGCUGCGUUUGGAGCACGAGCUCCUCCCUAAAACGGGAGUCCAUUGGGUGUCUUGAAUAUGCUGAACUCGACCUUUGUUGGGUGUAACUUAUAGAUUCCCAAAUAAAUAGAAGCGCU ...(((........((((....))))(((((......)))))....(((((.((((......(((...(((((((....))))))))))......)))).)))))..........))).. (-31.24 = -31.16 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:50 2006