Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,436,290 – 12,436,380 |
Length | 90 |
Max. P | 0.639016 |
Location | 12,436,290 – 12,436,380 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.45 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -16.43 |
Energy contribution | -16.77 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.74 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12436290 90 - 27905053 AUGAGAAUCCGAAAGGCAUGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUAAUAAAAGCGAAC-----------A ........((....))..(.(((((.((((((....))).)))))))).)..(.((((.....((((((....))))))....)))).)-----------. ( -20.60) >DroSec_CAF1 12041 101 - 1 AUGAGAAACCAAAAGGCAAGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUUAUAAAAGCGAAUGUUUCGCUUGUU ..............(((((((.(((((((((((.((((.(.......).))))))))................((((....)))))))))))..))))))) ( -22.90) >DroSim_CAF1 12215 101 - 1 AUGAGAAACCAAAAGGCAAGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUUAUAAAAGCGAAUGUUUUGCUUGUU ..............(((((((.(((((((((((.((((.(.......).))))))))................((((....)))))))))))..))))))) ( -23.40) >consensus AUGAGAAACCAAAAGGCAAGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUUAUAAAAGCGAAUGUUU_GCUUGUU ........((....))...(((((..(((((((.((((.(.......).)))))))).)))...)))))....((((....))))................ (-16.43 = -16.77 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:49 2006