Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,433,319 – 12,433,456 |
Length | 137 |
Max. P | 0.822523 |
Location | 12,433,319 – 12,433,416 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 95.88 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -24.29 |
Energy contribution | -24.40 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.89 |
Structure conservation index | 0.88 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12433319 97 + 27905053 UGUCCUUGAACCAGUGCAGGGGUUCCCCGGCUAACUACAAACUUGCACAGCAGGAAACUGUUGCAGCUACUUACUACGUAUAGGUUAACCUAUACUA .((..(((.....((((((((....)))(........).....)))))(((((....))))).)))..)).......(((((((....))))))).. ( -29.50) >DroSec_CAF1 9132 97 + 1 UGUCCUUGAACCAGUGCAGGGGUUCCCCGGCUAACUACUAACUUGCACAGUAGGAAACUGUUGCAGCUACUUACUGCGAAUAGGUUAACCCAUACUA ........((((.((((((((....)))(.....)........)))))..(((....)))((((((.......))))))...))))........... ( -24.80) >DroSim_CAF1 9253 97 + 1 UGUCCUUGAACCAGUGCAGGGGUUCCCCGGCUAACUACUAACUUGCACAGCAGGAAACUGUUGCAGCUACUUACUGCGAAUAGGUUAACCUAUACCA .............((((((((....)))(.....)........)))))(((((....)))))((((.......))))..(((((....))))).... ( -28.40) >consensus UGUCCUUGAACCAGUGCAGGGGUUCCCCGGCUAACUACUAACUUGCACAGCAGGAAACUGUUGCAGCUACUUACUGCGAAUAGGUUAACCUAUACUA ........((((.((((((((....)))(........).....)))))(((((....)))))((((.......)))).....))))........... (-24.29 = -24.40 + 0.11)
Location | 12,433,319 – 12,433,416 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 95.88 |
Mean single sequence MFE | -31.34 |
Consensus MFE | -29.40 |
Energy contribution | -28.30 |
Covariance contribution | -1.10 |
Combinations/Pair | 1.13 |
Mean z-score | -1.99 |
Structure conservation index | 0.94 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12433319 97 - 27905053 UAGUAUAGGUUAACCUAUACGUAGUAAGUAGCUGCAACAGUUUCCUGCUGUGCAAGUUUGUAGUUAGCCGGGGAACCCCUGCACUGGUUCAAGGACA ..(((((((....))))))).((((...(((((((((((((.....))))).......))))))))((.(((....))).))))))(((....))). ( -32.41) >DroSec_CAF1 9132 97 - 1 UAGUAUGGGUUAACCUAUUCGCAGUAAGUAGCUGCAACAGUUUCCUACUGUGCAAGUUAGUAGUUAGCCGGGGAACCCCUGCACUGGUUCAAGGACA ..(((.(((((..((.....(((((.....)))))....(((..((((((.......))))))..))).))..))))).)))....(((....))). ( -31.40) >DroSim_CAF1 9253 97 - 1 UGGUAUAGGUUAACCUAUUCGCAGUAAGUAGCUGCAACAGUUUCCUGCUGUGCAAGUUAGUAGUUAGCCGGGGAACCCCUGCACUGGUUCAAGGACA .((.(((((....)))))))(((((.....)))))..((((...((((((.......))))))...((.(((....))).))))))(((....))). ( -30.20) >consensus UAGUAUAGGUUAACCUAUUCGCAGUAAGUAGCUGCAACAGUUUCCUGCUGUGCAAGUUAGUAGUUAGCCGGGGAACCCCUGCACUGGUUCAAGGACA ((((...(((((((.((((.(((((.....))))).(((((.....))))).......)))))))))))(((....)))...))))(((....))). (-29.40 = -28.30 + -1.10)
Location | 12,433,343 – 12,433,456 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 93.51 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -21.12 |
Energy contribution | -20.90 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -2.27 |
Structure conservation index | 0.80 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12433343 113 + 27905053 CCCCGGCUAACUACAAACUUGCACAGCAGGAAACUGUUGCAGCUACUUACUACGUAUAGGUUAACCUAUACUAGCUCUUGCUAAGUGUAUGUAAAUAGGAACACCUAAGUAAA .....(((...((((.(((((((((((((....)))))).(((((........(((((((....))))))))))))..))).))))...))))..((((....)))))))... ( -32.80) >DroSec_CAF1 9156 113 + 1 CCCCGGCUAACUACUAACUUGCACAGUAGGAAACUGUUGCAGCUACUUACUGCGAAUAGGUUAACCCAUACUAACUCUUGUUAAGUGUAUGUAAAUAUUAAUACCUAAGUAAA ....((.(((((.......((((((((.....)))).))))((........)).....))))).))(((((((((....))))...)))))...................... ( -19.90) >DroSim_CAF1 9277 113 + 1 CCCCGGCUAACUACUAACUUGCACAGCAGGAAACUGUUGCAGCUACUUACUGCGAAUAGGUUAACCUAUACCAGCUCUUGCUAAGUGUAUGUAAAUAUUAAUACCUAAGUAAA ................((.((((((((((((..(((((((((.......))))))(((((....)))))..))).)))))))..))))).))..................... ( -26.80) >consensus CCCCGGCUAACUACUAACUUGCACAGCAGGAAACUGUUGCAGCUACUUACUGCGAAUAGGUUAACCUAUACUAGCUCUUGCUAAGUGUAUGUAAAUAUUAAUACCUAAGUAAA ................((((((.((((((....))))))..))(((.(((.((..(((((....)))))..((((....)))).))))).))).............))))... (-21.12 = -20.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:48 2006