Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,767,106 – 1,767,220 |
Length | 114 |
Max. P | 0.884219 |
Location | 1,767,106 – 1,767,220 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -21.84 |
Energy contribution | -21.77 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -2.03 |
Structure conservation index | 0.78 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1767106 114 + 27905053 UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGC------AAAAGCAACAGCAAGAGCCACAUCAACUGAAACUGAAACUGAAUCAGAGUAAGAGUCCU .....((((((((((((((((....(((((.((.......)).))))))))))))------........(((...((......))..)))............)))))))))......... ( -26.10) >DroSec_CAF1 76384 108 + 1 UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGA------AACAGCAACGGCAAGAGCCACAUCAACUGAA------ACUGAAUCGGAGUAAGAGUCCU .....((((((((((((((((....(((((.((.......)).)))))......)------))))))...(((....)))............------....)))))))))......... ( -29.20) >DroSim_CAF1 78776 120 + 1 UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGCAAAAGCAACAGCAACGGCAAGAGCCACAUCAACUGAAACUGAAACUGAAUCAGAGUAAGAGUCCU .....((((((((((((((((....(((((.((.......)).))))))))))))........(((....(((....)))...(((........)))..))))))))))))......... ( -31.20) >DroYak_CAF1 75638 114 + 1 UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAAGCGAAACAGCAACAGCAACAUCAACUGAAAAUG------AAACUGCAACUGAAACAGAAUCAGAGUAAGAGUCCU .....(((((((((.((((((.....((((.((((((..(((...((......))..)))..)).((....)).))))------.)))).......)))))))))))))))......... ( -25.50) >consensus UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGC______AACAGCAACGGCAAGAGCCACAUCAACUGAAACUGAAACUGAAUCAGAGUAAGAGUCCU .....((((((((((((((((....(((((.((.......)).))))))))))))..........((....)).............................)))))))))......... (-21.84 = -21.77 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:04 2006