Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,428,312 – 12,428,407 |
Length | 95 |
Max. P | 0.887414 |
Location | 12,428,312 – 12,428,407 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 87.14 |
Mean single sequence MFE | -24.97 |
Consensus MFE | -22.33 |
Energy contribution | -22.67 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.89 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12428312 95 - 27905053 CAUCGUCAUAACAGCUAUUCGACUAUUCAGCUAGUCGAUCGCCACAUGCUGCUAAGCAGAAACAUCACGGCGCGGCUGGAGAGUAUCUGUAUCUC ..........((((.(((((((....))..(((((((..((((...((((....))))((....))..))))))))))).))))).))))..... ( -27.40) >DroSec_CAF1 4148 79 - 1 CAUCGUCAUAACAGCUAUUCGACUAU-----UAGUCGAUCGCCACAUGCUGCUAAGCAGAAAAAUCACGGCUCGGCU-----------GUAUCUC ..........((((((..(((((...-----..)))))..(((...((((....))))((....))..)))..))))-----------))..... ( -22.70) >DroSim_CAF1 4227 90 - 1 CAUCGUCAUAACAGCUAUUCGACUAU-----UAGUCGAUCGCCACAUGCUGCUAAGCAGAAAAAUCACGGCGCGGCUGGAGAGUAUCUGUAUCUC ...........(((((..(((((...-----..))))).((((...((((....))))((....))..)))).)))))((((.........)))) ( -24.80) >consensus CAUCGUCAUAACAGCUAUUCGACUAU_____UAGUCGAUCGCCACAUGCUGCUAAGCAGAAAAAUCACGGCGCGGCUGGAGAGUAUCUGUAUCUC ...........(((((..(((((((......)))))))..(((...((((....))))((....))..)))..)))))................. (-22.33 = -22.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:45 2006