Locus 4738

Sequence ID 3R_DroMel_CAF1
Location 12,428,175 – 12,428,266
Length 91
Max. P 0.514660
window7779

overview

Window 9

Location 12,428,175 – 12,428,266
Length 91
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 70.21
Mean single sequence MFE -26.84
Consensus MFE -13.63
Energy contribution -12.95
Covariance contribution -0.68
Combinations/Pair 1.27
Mean z-score -1.58
Structure conservation index 0.51
SVM decision value -0.04
SVM RNA-class probability 0.514660
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12428175 91 - 27905053
ACAG----------AGCUAUAGCUAUAGUUUACGGCUAUAGCAUACGGCUAUUUGCCUAAUUUAUUGUCGUUUGACGGAAGUCGCACACACACAGAUACAC-----
....----------.(((((((((.........)))))))))....(((.....)))........(((.((.((((....)))).)))))...........----- ( -26.10)
>DroPse_CAF1 16829 100 - 1
AGUCGACUAGGCCCGACUCGAACUCGAUCCGGCGGCUAGCGCA------UAUUUGCCUAAUUUAUUGUCGUUUGACGGAAGUCACACACUCGGAAUCGGACUCGGA
.((((........))))((((..((((((((((((((((.(((------....)))))).......))))).((((....))))......))).)))))..)))). ( -31.21)
>DroSec_CAF1 4006 96 - 1
ACAG----------AGCUAUAGCUAUAGUUUACGGCUAUAGCAUACGGCUAUUUGCCUAAUUUAUUGUCGUUUGACGGAAGUCGCACACACACAGACGCACACCAA
....----------.(((((((((.........)))))))))....(((.....)))........(((((((((((....)))(......)..))))).))).... ( -26.30)
>DroSim_CAF1 4091 90 - 1
ACAG----------AGCUAUAGCUAUAGUUUACGG------CAUACGGCUAUUUGCCUAAUUUAUUGUCGUUUGACGGAAGUCGCACACACACAGAUCCACACCAA
...(----------((((((....)))))))..((------.....(((.....)))........(((.((.((((....)))).)))))............)).. ( -19.40)
>DroPer_CAF1 16823 100 - 1
AGUCGACUAGGCCCGACUCGAACUCGAUCCGGCGGCUAGCGCA------UAUUUGCCUAAUUUAUUGUCGUUUGACGGAAGUCACACACUCGGAAUCGGACUCGGA
.((((........))))((((..((((((((((((((((.(((------....)))))).......))))).((((....))))......))).)))))..)))). ( -31.21)
>consensus
ACAG__________AGCUAUAGCUAUAGUUUACGGCUAGAGCAUACGGCUAUUUGCCUAAUUUAUUGUCGUUUGACGGAAGUCGCACACACACAGACGCACACCAA
..............((((((....))))))...(((..................)))............((.((((....)))).))................... (-13.63 = -12.95 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:44 2006