Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,423,186 – 12,423,294 |
Length | 108 |
Max. P | 0.688208 |
Location | 12,423,186 – 12,423,294 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 90.03 |
Mean single sequence MFE | -43.87 |
Consensus MFE | -36.03 |
Energy contribution | -36.28 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.07 |
Mean z-score | -2.08 |
Structure conservation index | 0.82 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12423186 108 + 27905053 GAACUG---CCUGGCUGUUGGCCAAAAGCAAAGCAACAGGGCGCUGCACAGCUGGUAAACGCCGGCCAGCAGCAUUCCCAAGGCAGCGCUCCACUGCAGCAGCGGGAAGCC ...(((---(((.((((((((((....(((..((......))..)))......(((....))))))))))))).......)))))).(((.(.((((....))))).))). ( -46.20) >DroSec_CAF1 22076 108 + 1 GAACUG---CUUCGCUGUUGGCCAAAAGCAAAGCAACAGGGCGCUGCACAGCUGGUAAACGCCGGCCAGCAGCAUUCCCAAGGCAGCGCUCCACUGCAGCAGCGGGAAGCC .....(---((((.((((((((.....))...(((...(((((((((...((((((........))))))..(........))))))))))...)))..))))))))))). ( -45.10) >DroSim_CAF1 21813 108 + 1 GAACUG---CUUGGCUGUUGGCCAAAAGCAAAGCAACAGGGCGCUGCACAGCUGGUAAACGCCGGCCAGCAGCAUUCCCAAGGCAGCGCUCCACUGCAGCAGCGGGAAACC ...(((---((((((.....))))).......(((...(((((((((...((((((........))))))..(........))))))))))...))).)))).((....)) ( -44.90) >DroEre_CAF1 22413 108 + 1 GAACUG---GUUGGCUGUUGGCCAAAAGCUGAGCAACAGGGCGCUGCACAGAUGGUAAACGCCGGCCAGCAGCAUUCCCAGAGCAGCGCUCCACUGCAGCAGCGGGAAGCC ...(((---(...((((((((((.....(((.....)))((((.(((.(....))))..))))))))))))))....))))......(((.(.((((....))))).))). ( -43.60) >DroYak_CAF1 22749 108 + 1 GAACUG---CUUGGCUGUUGGCCAAAAGCAGAGCAACAGGGCGCUGCACAGCUGGUAAACGCCGGCCAGCAGCAUUCCCAAAGCAGCGCUCCACUGCAGCAGCGGGAAGCC ...(((---(((.((((((((((....((((.((......)).))))......(((....))))))))))))).......)))))).(((.(.((((....))))).))). ( -46.90) >DroAna_CAF1 21743 111 + 1 GAACUGUUGUUUGUUUGAUGGCCAAAAGCAGAGCAUCAGGGCGGCGCAAAGGUGGUAUAUUCCGGCCAUCAGCAUUCCCAGGGCGGCGCCCCACUCGAUCAGCGGGAAGGC ...((((((.(((..(((((((.....))....)))))(((((.(((...((((((........))))))......(....)))).)))))....))).))))))...... ( -36.50) >consensus GAACUG___CUUGGCUGUUGGCCAAAAGCAAAGCAACAGGGCGCUGCACAGCUGGUAAACGCCGGCCAGCAGCAUUCCCAAGGCAGCGCUCCACUGCAGCAGCGGGAAGCC .............((((((((((....((...((......))...))......((......)))))))))))).(((((...((.((((......)).)).)))))))... (-36.03 = -36.28 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:44 2006