| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,423,020 – 12,423,113 |
| Length | 93 |
| Max. P | 0.807273 |
| Location | 12,423,020 – 12,423,113 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.07 |
| Mean single sequence MFE | -31.97 |
| Consensus MFE | -18.89 |
| Energy contribution | -19.42 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12423020 93 - 27905053 UUCGAAAA---CCAUCGAUUCAUUUGGACCCUGAGGAGCAGCACCAUCUGCUCCUCGGCGGCGGCAGCUUCAUUCCCAAGAUGGCCAAGACGUAAC------------ .((((...---...))))........(.(((((((((((((......))))))))))).)))(((..(((.......)))...)))..........------------ ( -30.80) >DroSec_CAF1 21910 93 - 1 UGCGAAAA---CCCUCGCUUCAUUUGGACCCUGAGGAGCAGCACCAUCUGCUCCUCGGCGGCGGCAGCUUCAUUCCCAAGAUGGCCAAGACGUAAC------------ .((((...---...))))........(.(((((((((((((......))))))))))).)))(((..(((.......)))...)))..........------------ ( -32.90) >DroSim_CAF1 21647 93 - 1 UGCGAAAA---CCCUCGGUUCAUUUGGACCCUGAGGAGCAGCACCAUCUGCUCCUCGGCGGCGGCAGCUUCAUUCCCAAGAUGGCCAAGACGUAAC------------ ((((....---.((..(((((....)))))(((((((((((......))))))))))).)).(((..(((.......)))...)))....))))..------------ ( -34.70) >DroEre_CAF1 22238 93 - 1 UGCGAAAA---ACCUCGGUUCACUUGGACGCGGAGGAGCAGCACCAUCUGCUCUUCGGCGGCGGCAGCUUCAUUCCCAAGACGGCCAAGACGUAAC------------ (((((...---...))((((..(((((.(((.(((((((((......))))))))).)))((....)).......)))))..)))).....)))..------------ ( -34.00) >DroWil_CAF1 24474 105 - 1 UGCGGAAGGCUUCCUUGGUUGCUGUCCUCCAGCAAGAGGAGCAACAAUUGCUCUUCCAGAACG--AACAAAAAU-CAAAGUUGGCAAUGGCCUAAUUGUGUUCUCUGU ...(((((((.......(((((..(((((......))))))))))....)).)))))(((..(--((((.....-...(((((((....))).)))).)))))))).. ( -30.80) >DroYak_CAF1 22583 93 - 1 UGCGAAAA---CCCUCGGUUCCUCUGGACCCUGAGGAGCAGCACCAUUUGCUCUUUGGCGGCGGCAGCUACAUUCCCAAGAUGGCCAAGACGUAAA------------ (((((...---...)).(((((((.(....).))))))).)))...(((((((((.((((((....))).((((.....))))))))))).)))))------------ ( -28.60) >consensus UGCGAAAA___CCCUCGGUUCAUUUGGACCCUGAGGAGCAGCACCAUCUGCUCCUCGGCGGCGGCAGCUUCAUUCCCAAGAUGGCCAAGACGUAAC____________ ......................(((((.(((((((((((((......))))))))))).(((....))).............)))))))................... (-18.89 = -19.42 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:43 2006